 |
Job Description | O61768 | Confidence | 99.49% | Date | Sat Apr 13 13:04:39 BST 2013 |
Rank | 375 | Aligned Residues | 98 |
% Identity | 21% | Template | c2lctA_ |
PDB info |
PDB header:signaling protein | Chain: A: PDB Molecule:proto-oncogene vav; |
PDBTitle: solution structure of the vav1 sh2 domain complexed with a syk-derived2 doubly phosphorylated peptide
|
Resolution | UNK |
|
 |
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | |
|
. | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | |
. | . | . | 80 |
Predicted Secondary structure |   |
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
| . | . |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
| . |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
Query Sequence |   |
K | D | L | L | H | Q | K | Y | Y | H | G | L | L | P | R | E | D | I | Q | E | M | L | N | . |
. |
K | P | G | Q | F | L | L | R | T | S | E | P | V | K | G | E | K | R | Q | F | V | L | S | V | V | G | E | K | K | T | S | A | N | H | F | V | V | R | E | S | D | H | K | V | Y | V | D | K | I | G | . |
F | P | T | I |
Query Conservation |   |
  |   |
|   |   |   |   |
|
|
|
|   |
|   |
|   |   |
|
|   |
|
|   | . | . |   |   |
|   |
|
|
|
|   |
|   |   |   |   |
|   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |
|
|   |
|   |
|
|
|   |   |
|
|   |
|
|   |   |   |   |   |
|   |
|
|
|
|   |
|   |   |   |   |   |   | . | . | . |   |   |
|
|
|   |   |   |   |   | . | . |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|
|
Template Sequence |   |
Q | D | L | S | V | H | L | W | Y | A | G | P | M | E | R | A | G | A | E | S | I | L | A | N | R | S | D | G | T | F | L | V | R | Q | R | V | K | D | A | A | E | . |
. |
. |
F | A | I | S | I | K | Y | N | V | E | . |
. |
V | K | H | I | K | I | M | T | A | E | G | L | Y | R | I | T | E | K | K | A | F | R | G | L |
Template Known Secondary structure |   |
S |
| S | T | T | S | S | S |  |  |  | S |
|
|  |  |  |  |  |  |  |  |  |  | S |
| T | T | B |  |  |  |  |  |
|
| S | S | S |
| S | . | . | . |  |  |  |  |  |  |
| S | S | S | . | . |  |  |  |  |  |
|  |  |  | T | T |  |  |  | S | S | S | S | S |  |  | S | S |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  | . | . | . |  |  |  |  |  |  |  |
|
|
| . | . |
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
664 | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | |
|
|
. | . | . | . | . | 710 | . | . | . | . | |
|
. | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | E | L | V | N | H | Y | V | S | T | K | E | S | F | S | T | K | D | G | T | V | K | A | V | L | K |
Query Conservation |   |
  |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
Template Sequence |   |
T | E | L | V | E | F | Y | Q | Q | N | S | L | K | D | C | F | K | S | L | D | T | T | L | Q | F | P |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T | S |
|  |  |  |  | S | S | S |
|
|
|
|
|
| B |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
739 | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|