26/04/2013 11:25:30 : INFO  : Run start: Fri Apr 26 11:25:30 BST 2013
26/04/2013 11:25:30 : INFO  : Initialised job
26/04/2013 11:25:30 : INFO  : Initialised job:
Sequence
>batch____
MTDKDLLHQKYYHGLLPREDIQEMLNKPGQFLLRTSEPVKGEKRQFVLSVVGEKKTSANH
FVVRESDHKVYVDKIGFPTIIELVNHYVSTKESFSTKDGTVKAVLKQAVERQKWELYHED
VELTKKLGEGAFGEVWKGKLLKILDANHQPVLVAVKTAKLESMTKEQIKEIMREARLMRN
LDHINVVKFFGVAAGTEPLYVIMELADGGALDSALGKLHFPMIKKYELIYQAANGLAYIH
EKNLMHRDVAARNCLYGGGQVL

26/04/2013 11:25:30 : INFO  : Checked sequence
26/04/2013 11:25:31 : INFO  : Finding homologues with PSI-BLAST
26/04/2013 11:25:31 : INFO  : PSI-BLAST 3 iterations
26/04/2013 11:27:07 : INFO  : PSI-BLAST 5 iterations
26/04/2013 11:29:37 : INFO  : Finished PSI-BLAST
26/04/2013 11:29:37 : INFO  : Running Buildali to generate a3m file
26/04/2013 12:27:06 : INFO  : Converting to HMM
26/04/2013 12:27:21 : INFO  : Calibrating HMM
26/04/2013 12:27:27 : INFO  : Searching HMM database
26/04/2013 12:32:19 : INFO  : Finished buildali
26/04/2013 12:32:19 : INFO  : Predicting secondary structure
26/04/2013 12:32:19 : INFO  : Predicted secondary structure (PSI-Pred)
26/04/2013 12:32:20 : INFO  : Predicting Disordered regions
26/04/2013 12:32:20 : INFO  : Predicted Disorder (Disopred)
26/04/2013 12:32:20 : INFO  : Running memsat_svm check
26/04/2013 12:33:41 : INFO  : Globular protein
26/04/2013 12:33:42 : INFO  : Predicted Transmembrane (memsat_svm) ID 'cba8a7bd53f021fa'
26/04/2013 12:33:42 : INFO  : Initialising fold library search
26/04/2013 12:33:42 : INFO  : Initialised search input
26/04/2013 12:33:42 : INFO  : Building Ensemble models
26/04/2013 12:33:42 : INFO  : Building hh.c2fo0A_.model.1.pdb
26/04/2013 12:33:42 : INFO  : Building hh.c1oplA_.model.2.pdb
26/04/2013 12:33:42 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cba8a7bd53f021fa/hh.c1oplA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cba8a7bd53f021fa/c1oplA_.2.pdb
26/04/2013 12:33:43 : INFO  : Building hh.c1k9aB_.model.3.pdb
26/04/2013 12:33:43 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cba8a7bd53f021fa/hh.c1k9aB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cba8a7bd53f021fa/c1k9aB_.3.pdb
26/04/2013 12:33:43 : INFO  : Building hh.c1y57A_.model.4.pdb
26/04/2013 12:33:43 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cba8a7bd53f021fa/hh.c1y57A_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cba8a7bd53f021fa/c1y57A_.4.pdb
26/04/2013 12:33:43 : INFO  : Building hh.c2h8hA_.model.5.pdb
26/04/2013 12:33:44 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cba8a7bd53f021fa/hh.c2h8hA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cba8a7bd53f021fa/c2h8hA_.5.pdb
26/04/2013 12:33:44 : INFO  : Building hh.c2c0iA_.model.6.pdb
26/04/2013 12:33:44 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cba8a7bd53f021fa/hh.c2c0iA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cba8a7bd53f021fa/c2c0iA_.6.pdb
26/04/2013 12:33:44 : INFO  : Building c2fo0A_.1.pdb
26/04/2013 12:33:44 : INFO  : Building c1oplA_.2.pdb
26/04/2013 12:33:45 : INFO  : Building c1k9aB_.3.pdb
26/04/2013 12:33:45 : INFO  : Building c1y57A_.4.pdb
26/04/2013 12:33:46 : INFO  : Building c2h8hA_.5.pdb
26/04/2013 12:33:46 : INFO  : Building c2c0iA_.6.pdb
26/04/2013 12:33:47 : INFO  : Building c4fl2A_.7.pdb
26/04/2013 12:33:47 : INFO  : Building c2ozoA_.8.pdb
26/04/2013 12:33:48 : INFO  : Building c3cblA_.9.pdb
26/04/2013 12:33:48 : INFO  : Building c4im2A_.10.pdb
26/04/2013 12:33:49 : INFO  : Building c3qa8H_.11.pdb
26/04/2013 12:33:50 : INFO  : Building c3qa8A_.12.pdb
26/04/2013 12:33:51 : INFO  : Building c3c4wB_.13.pdb
26/04/2013 12:33:51 : INFO  : Building c2j0kB_.14.pdb
26/04/2013 12:33:51 : INFO  : Building c1ym7C_.15.pdb
26/04/2013 12:33:52 : INFO  : Building c3c4yA_.16.pdb
26/04/2013 12:33:52 : INFO  : Building c2acxB_.17.pdb
26/04/2013 12:33:52 : INFO  : Building c3nyoB_.18.pdb
26/04/2013 12:33:53 : INFO  : Building c3pfqA_.19.pdb
26/04/2013 12:33:54 : INFO  : Building c3tkuB_.20.pdb
26/04/2013 12:34:04 : INFO  : Finished HH model building
26/04/2013 12:34:04 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
26/04/2013 12:34:08 : INFO  : html domain output complete ID 'cba8a7bd53f021fa'
26/04/2013 13:20:59 : INFO  : Run end  : Fri Apr 26 13:20:59 BST 2013
