 |
Job Description | Q95PX0 | Confidence | 36.71% | Date | Sat Apr 13 13:19:58 BST 2013 |
Rank | 379 | Aligned Residues | 105 |
% Identity | 12% | Template | c1xovA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:ply protein; |
PDBTitle: the crystal structure of the listeria monocytogenes bacteriophage psa2 endolysin plypsa
|
Resolution | 1.80 Å |
|
 |
  |   |
23 | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | T | K | G | D | F | V | Y | V | V | E | K | S | T | D | G | W | W | K | G | E | A | P | N | G | G | V | G | W | F | P | S | N | Y | V | E | E | V | E | A | S | T | N | G | N | Q | G | S | I | E | N | R | N | P | A | A | A | A | V | P | A | P | I | M | M | Q | A | P | P | P | K | L | Q | A | S | R | S | S | F | E |
Query Conservation |   |
  |   |   |
|
|   |
|   |
|
|
|   |   |   |   |
|
|
|   |
|   |   |   |   |
|   |   |
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |
|   |   |   |   |   |   |
| . |   |   |   |   |
|
|
|   |   | . |   |
|
|
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
| . | . | . | . | . | . | . |
Template Sequence |   |
Y | K | A | G | S | S | L | L | V | Y | E | . |
H | N | K | Y | W | Y | K | A | Y | . |
I | N | D | K | L | C | Y | I | Y | K | S | F | C | I | S | N | G | K | K | D | A | K | G | R | I | K | V | R | I | K | S | A | K | D | L | R | I | P | V | W | N | N | T | K | L | N | S | G | K | I | K | . |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  | T | T |
|  |  |  |  |  |  | . |
| S | S | S |  |  |  |  |  | . |  | T | T |  |  |  |  |  |  | G | G | G |  |  |  |
|
|
|
| S | T | T |
|
|  |  |  |  |  |
|
| T | T | T |
|
|  |  |  |  | S | S | T | T |
| S | S | S | S |  |  | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  | . |  |
|
|  |  |  |  |  |  | . |  |
|
|  |  |  |  |  |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
208 | . | 210 | . | . | . | . | . | . | . | . | |
. | 220 | . | . | . | . | . | . | . | |
. | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
  |
  |   |
103 | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | Q | V | V | V | A | L | Y | S | F | D | A | S | S | S | E | E | L | S | F | K | K | G | E | R | L | E | I | V | D | H | P | E | H | D | P | D | W | W | M | A | R | N | A | S | G | T | T | G | L | V | P | R | N | Y | I |
Query Conservation |   |
  |   |   |   |   |
|
|
|   |   |   |
|   |   |   |   |
|
|
|   |   |   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |
|
|   |
|
|
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |
|   |
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
W | Y | S | P | G | T | K | L | S | W | Y | D | N | K | K | G | . |
. |
. |
. |
Y | L | E | L | W | Y | E | K | D | G | W | Y | Y | T | A | N | Y | F |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |
| T | T |
|  |  |  |  |  |
|
| S | S | S | . | . | . | . | S |  |  |  |  |  | T | T | T |  |  |  |  |  |
| G | G | G |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
| . | . | . | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
279 | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | |
|
|
|
. | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|