Return to main results Retrieve Phyre Job Id

Job DescriptionE6N0W0
Confidence71.67%DateSat Apr 13 12:48:06 BST 2013
Rank285Aligned Residues244
% Identity8%Templatec3l9oA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome
Resolution3.39 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   118.120.........130.........140.........150.........160.........170.........180.........190..
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Query Sequence  RREEDEKMRKVQMEKAKVKQMQNQKQQENERLAQRQQREKTLQFQLQALDEKVIDVEVDIGKAKEAVAEVTGFIE. . . . .
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Template Sequence  PEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLV
Template Known Secondary structure  SSTT


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   601........610.........620.........630.........640.........650.........660.........670.........680
 
   193......200.........210.........220.........230........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RMRSTRDEKVARIKELQETNQKTAIESQELGHQLLQKQSAHKETTQ
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Template Sequence  EISVNGKDNYGWGAVVDFAKRISAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEESICAVIPITLDSIK
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   681........690.........700.........710.........720.........730.........740.........750.........760
 
   239240.........250.........260.........270.........280...... ...290.........300.........310.......
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Query Sequence  RKSELEALRRKRDAIRKAIEDAALELSTEKEKSYNQTEILKTNKEKYK. TDVYSKLVAKREEYRNSFELLVHAQTHARSK
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Template Sequence  SIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEE
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   769770.........780.........790.........800.........810.........820.........830.........840........
 
   318.320.........330.........340.........350.........360.
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Query Sequence  IGEFEAKSAPASAAPAPAPAPAPTTTNGFPANFNDAFGEFDKTD
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Template Sequence  LYGKYSRKHDLHEDMKQLKRKISEQAVIQLDDLRRRKRVLRRLG
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   849850.........860.........870.........880.........890..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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