Return to main results Retrieve Phyre Job Id

Job DescriptionE6N0W0
Confidence99.44%DateSat Apr 13 12:48:06 BST 2013
Rank180Aligned Residues54
% Identity41%Templatec3rebD_
PDB info PDB header:protein bindingChain: D: PDB Molecule:tyrosine-protein kinase hck; PDBTitle: hiv-1 nef protein in complex with engineered hck-sh3 domain
Resolution3.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   769770.........780.........790.........800.........810.........820....
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Query Sequence  RATAVYDYEASQPDELGFKTGDVIIVTDKSEAEWWSGHREQDPSKSGLFPSNYVQQ
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Template Sequence  IVVALYDYVSWSPDDLSFQKGDQMVVLEE. SGEWWKAR. SLATRKEGYIPSNYVAR
Template Known Secondary structure  SS
B

SSTTB

B
TT

.SSS.TTT

GGG
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   82.......90.........100.........110 ........ .120.........130.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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