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Job DescriptionE6N0W0
Confidence94.66%DateSat Apr 13 12:48:06 BST 2013
Rank248Aligned Residues344
% Identity7%Templatec1sjjB_
PDB info PDB header:contractile proteinChain: B: PDB Molecule:actinin; PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-2 actinin
Resolution20.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60.........70.........80......
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Query Sequence  RSANNTPELEPGAEPPQKSPAPKTFEDKRQDNLSKGQAELERRRRVLEEEEQRRRAEVEKKEREEEAKKNRERQEKERQA
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Template Sequence  RLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETA
Template Known Secondary structure  TTTT





SSTT
TTTTTTTTTTTS
TTTSS
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   347..350.........360.........370.........380.........390.........400.........410.........420......
 
   87..90.........100.........110.........120...... ...130.........140.........150.........160....
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Query Sequence  EVERQAELERQRIIEAQREEEEKKRRLEMERRREEDEKMR. . KVQMEKAKVKQMQNQKQQENERLAQRQQREKTLQFQLQ
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Template Sequence  TLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLE
Template Known Secondary structure 
TTTTT
TT
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   427..430.........440.........450.........460.........470.........480.........490.........500......
 
   165....170.........180.........190... ......200.........210.........220.........230.........
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Query Sequence  ALDEKVIDVEVDIGKAKEAVAEVTGFIER. . . . . MRSTRDEKVARIKELQETNQKTAIESQELGHQLLQKQSAHKETTQR
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Template Sequence  TIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVN
Template Known Secondary structure  TTTTTTT




SSTTTT

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   507..510.........520.........530.........540.........550.........560.........570.........580......
 
   240.........250.........260.........270.........280.........290.........300.........310.........
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Query Sequence  KSELEALRRKRDAIRKAIEDAALELSTEKEKSYNQTEILKTNKEKYKTDVYSKLVAKREEYRNSFELLVHAQTHARSKIG
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Template Sequence  MAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLE
Template Known Secondary structure  S
S

SS
S

TTTTSSTT
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   587..590.........600.........610.........620.........630.........640.........650.........660......
 
   320.........330.........340.........350
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Query Sequence  EFEAKSAPASAAPAPAPAPAPTTTNGFPANF
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Template Sequence  DQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQ
Template Known Secondary structure  T
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   667..670.........680.........690.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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