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Job DescriptionE6N0W0
Confidence86.31%DateSat Apr 13 12:48:06 BST 2013
Rank273Aligned Residues316
% Identity8%Templatec2oexB_
PDB info PDB header:protein transportChain: B: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: structure of alix/aip1 v domain
Resolution2.58 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   31........40.........50.........60. ........70.........80.........90.........100......
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Query Sequence  FEDKRQDNLSKGQAELERRRRVLEEEEQRRR. . . . AEVEKKEREEEAKKNRERQEKERQAEVERQAELERQRIIEAQREE
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Template Sequence  YNQRKADLVNRSIAQXREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNRE
Template Known Secondary structure  TTTTGGGG

STTS

TTT
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   370.........380.........390.........400.........410.........420.........430.........440.........
 
   107..110.........120.........130.........140.........150.........160.........170.........180......
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Query Sequence  EEKKRRLEMERRREEDEKMRKVQMEKAKVKQMQNQKQQENERLAQRQQREKTLQFQLQALDEKVIDVEVDIGKAKEAVAE
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Template Conservation          
                             
          
         
             
      
Template Sequence  ILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPE
Template Known Secondary structure  SSTT

S

TTTTS
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   450.........460.........470.........480.........490.........500.........510.........520.........
 
   187.. 190.........200.........210.........220.........230.........240.........250.....
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Query Sequence  VTG. . . . . . . . . . . FIERMRSTRDEKVARIKELQETNQKTAIESQELGHQLLQKQSAHKETTQRKSELEALRRKRDAIRK
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Template Conservation                           
             
                                        
Template Sequence  LNAAIPSANPAKTXQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDXTSKFLTALAQDGVINEEALSVTELDRVYG
Template Known Secondary structure  TTS





TTTTT
T



SSS

T
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   530.........540.........550.........560.........570.........580.........590.........600.........
 
   256...260.........270.........280.........290.........300.........310.........320.........330.....
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Query Sequence  AIEDAALELSTEKEKSYNQTEILKTNKEKYKTDVYSKLVAKREEYRNSFELLVHAQTHARSKIGEFEAKSAPASAAPAPA
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Template Conservation                 
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Template Sequence  GLTTKVQESLKKQEGLLKNIQVSHQEFSK. . XKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRF
Template Known Secondary structure  TT..TS


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   610.........620.........630........ .640.........650.........660.........670.........680.......
 
   336...340........
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Query Sequence  PAPAPTTTNGFPA
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Template Conservation 
  
 
    
  
Template Sequence  QNKCSDIVFARKT
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   688.690.........700
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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