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Job DescriptionE6N0W0
Confidence97.09%DateSat Apr 13 12:48:06 BST 2013
Rank226Aligned Residues339
% Identity8%Templatec2oevA_
PDB info PDB header:protein transportChain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MCGISSRSANNTPELEPGAEPPQKSPAPKTFEDKRQDNLSKGQAELERRRRVLEEEEQRRRAEVEKKEREEEAKKNRERQ
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Template Sequence  STPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILT
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   340.........350.........360.........370.........380.........390.........400.........410.........
 
   81........90.........100.........110.........120.........130. ........140.........
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Query Sequence  EKERQAEVERQAELERQRIIEAQREEEEKKRRLEMERRREEDEKMRKVQME. . . . . . . . . . . KAKVKQMQNQKQQENERL
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Template Sequence  KSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVL
Template Known Secondary structure  TTTTTTSSSS

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   420.........430.........440.........450.........460.........470.........480.........490.........
 
   150.........160.........170.........180.... .....190.........200.........210.........220.....
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Query Sequence  AQRQQREKTLQFQLQALDEKVIDVEVDIGKAKEAV. . . . AEVTGFIERMRSTRDEKVARIKELQETNQKTAIESQELGHQ
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Template Sequence  DKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFD
Template Known Secondary structure  TTTS
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   500.........510.........520.........530.........540.........550.........560.........570.........
 
   226...230.........240.........250.........260.........270.........280.........290.........300.....
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Query Sequence  LLQKQSAHKETTQRKSELEALRRKRDAIRKAIEDAALELSTEKEKSYNQTEILKTNKEKYKTDVYSKLVAKREEYRNSFE
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Template Sequence  MTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMK. . QSNNEANLREEVLKNLA
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   580.........590.........600.........610.........620.........630.........640 .........650.......
 
   306...310.........320.........330.........340.
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Query Sequence  LLVHAQTHARSKIGEFEAKSAPASAAPAPAPAPAPT
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Template Sequence  TAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSD
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   658.660.........670.........680.........690...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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