Return to main results Retrieve Phyre Job Id

Job DescriptionE6N0W0
Confidence41.31%DateSat Apr 13 12:48:06 BST 2013
Rank319Aligned Residues243
% Identity10%Templatec3tnfB_
PDB info PDB header:protein transportChain: B: PDB Molecule:lida; PDBTitle: lida from legionella in complex with active rab8a
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   127..130.........140.........150.........160.........170.........180.........190.........200......
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Query Sequence  KVQMEKAKVKQMQNQKQQENERLAQRQQREKTLQFQLQALDEKVIDVEVDIGKAKEAVAEVTGFIERMRSTRDEKVARIK
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Template Conservation 
 
       
       
             
                                               
Template Sequence  EYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLM
Template Known Secondary structure  TTTTTTTTTTSTT




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   204.....210.........220.........230.........240.........250.........260.........270.........280...
 
   207..210.........220.........230.........240.........250.........260.........270.........280......
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Query Sequence  ELQETNQKTAIESQELGHQLLQKQSAHKETTQRKSELEALRRKRDAIRKAIEDAALELSTEKEKSYNQTEILKTNKEKYK
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Template Sequence  EKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWD
Template Known Secondary structure  TTSTT
S
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TTSSSSGGG
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TT
STT

TTTTT
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   284.....290.........300.........310.........320.........330.........340.........350.........360...
 
   287..290.........300.........310.........320.........330.........340.........350.........360......
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Query Sequence  TDVYSKLVAKREEYRNSFELLVHAQTHARSKIGEFEAKSAPASAAPAPAPAPAPTTTNGFPANFNDAFGEFDKTDASQRF
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Template Sequence  AIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQD
Template Known Secondary structure  TTTT

S
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   364.....370.........380.........390.........400.........410.........420.........430.........440...
 
   367..
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Query Sequence  DAD
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Template Conservation     
Template Sequence  MLA
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   444..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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