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Job Description | E6N0W0 | Confidence | 47.14% | Date | Sat Apr 13 12:48:06 BST 2013 |
Rank | 310 | Aligned Residues | 143 |
% Identity | 15% | Template | c2ocyB_ |
PDB info |
PDB header:endocytosis/exocytosis | Chain: B: PDB Molecule:rab guanine nucleotide exchange factor sec2; |
PDBTitle: complex of the guanine exchange factor sec2p and the rab2 gtpase sec4p
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Resolution | 3.30 Å |
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80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | |
. | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
Q | E | K | E | R | Q | A | E | V | E | R | Q | A | E | L | E | R | Q | R | I | I | E | A | Q | R | E | E | E | E | K | K | R | R | L | E | M | E | R | R | R | E | E | D | E | . |
K | M | R | K | V | Q | M | E | K | A | K | V | K | Q | M | Q | N | Q | K | Q | Q | E | N | E | R | L | A | Q | R | Q | Q | R | E | K | T |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
L | S | T | Q | L | I | E | S | V | D | K | Q | S | H | L | E | E | Q | L | N | K | S | L | K | T | I | A | S | Q | K | A | A | I | E | N | Y | N | Q | L | K | E | D | Y | N | T | L | K | R | E | L | S | D | R | D | D | E | V | K | R | L | R | E | D | I | A | K | E | N | E | L | R | T | K | A | E | E | E | A | D | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . |
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159 | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
. | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
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Query Sequence |   |
L | Q | F | Q | L | Q | A | L | D | E | K | V | I | D | V | E | V | D | . |
I | G | K | A | K | E | A | V | A | E | V | T | G | F | I | E | R | M | R | S | T | R | D | E | K | V | A | R | I | K | E | L | Q | E | T | N | Q | K | T | A | I | E | S | Q | E | L |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
L | N | K | E | V | E | D | L | T | A | S | L | F | D | E | A | N | N | X | V | A | D | A | R | K | E | K | Y | A | I | E | I | L | N | K | R | L | T | E | Q | L | R | E | K | D | T | L | L | D | T | L | T | L | Q | L | K | N | L | K | K | V | X | H | S | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
97 | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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Phyre2 is part of Genome3D |
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