Return to main results Retrieve Phyre Job Id

Job DescriptionE6N0W0
Confidence95.40%DateSat Apr 13 12:48:06 BST 2013
Rank240Aligned Residues269
% Identity12%Templatec1f5nA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40.........50.........60.........70........ .80.........90.
Predicted Secondary structure 





.....
Query SS confidence 





























































. . . . .












Query Sequence  PGAEPPQKSPAPKTFEDKRQDNLSKGQAELERRRRVLEEEEQRRRAEVEKKEREEEAKKNRE. . . . . RQEKERQAEVERQ
Query Conservation                 


 

  

   


     
 
                       .....  
       
  
Alig confidence 





























































.....












Template Conservation    
        
 
   
 
         
            

                              
     
Template Sequence  PCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLE
Template Known Secondary structure 
B

SS
SS



GGG
Template Predicted Secondary structure 





Template SS confidence 















































































   310.........320.........330.........340.........350.........360.........370.........380.........
 
   92.......100.........110.........120.........130.........140.........150.........160.........170.
Predicted Secondary structure 
Query SS confidence 















































































Query Sequence  AELERQRIIEAQREEEEKKRRLEMERRREEDEKMRKVQMEKAKVKQMQNQKQQENERLAQRQQREKTLQFQLQALDEKVI
Query Conservation    
                     
    
 
                                   
            
Alig confidence 















































































Template Conservation                                                   
         
        
           
Template Sequence  KKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKE
Template Known Secondary structure  TTTTSSTTSS


TTT
Template Predicted Secondary structure 
Template SS confidence 















































































   390.........400.........410.........420.........430.........440.........450.........460.........
 
   172.......180.........190.........200.........210.........220.........230.........240.........250.
Predicted Secondary structure 
Query SS confidence 















































































Query Sequence  DVEVDIGKAKEAVAEVTGFIERMRSTRDEKVARIKELQETNQKTAIESQELGHQLLQKQSAHKETTQRKSELEALRRKRD
Query Conservation                                                                                  
Alig confidence 















































































Template Conservation              
                                                
    
             
Template Sequence  SMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERT
Template Known Secondary structure 
SSS
Template Predicted Secondary structure 
Template SS confidence 















































































   470.........480.........490.........500.........510.........520.........530.........540.........
 
   252.......260.........270.........280.....
Predicted Secondary structure 

Query SS confidence 

































Query Sequence  AIRKAIEDAALELSTEKEKSYNQTEILKTNKEKY
Query Conservation                                    
Alig confidence 

































Template Conservation                 
      
  

  

 

Template Sequence  LALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM
Template Known Secondary structure  T

Template Predicted Secondary structure 

Template SS confidence 

































   550.........560.........570.........580...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D