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Job DescriptionA1IGU4
Confidence94.73%DateTue Jul 30 13:18:16 BST 2013
Rank287Aligned Residues270
% Identity7%Templatec2rajA_
PDB info PDB header:structural proteinChain: A: PDB Molecule:sorting nexin-9; PDBTitle: so4 bound px-bar membrane remodeling unit of sorting nexin 9
Resolution2.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   170.........180.........190.........200.........210.........220.........
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Query Sequence  QRITKYPLLLQKILENTPADASAHPALQRATSALQDVNGNINEYKMRKEVALKYTKVEQL
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Template Sequence  MRMERLQAWMTRMCRHPVISESE. . VFQQFLNFRDEKE. . WKTGKRKAERDELAGVMIFS
Template Known Secondary structure  T
TTGGGS..S

S..T



GGGGGG
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   326...330.........340........ .350.........360. ........370.........380.
 
   230.........240.........250.........260.........270.........280.........
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Query Sequence  SLRERLARINTHTLSKKTTRLSQMLKQEAGLVSRTEDKEFDDLEERFQWVSLCVKELRNN
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Template Sequence  TMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKA
Template Known Secondary structure  G
S



TT
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   382.......390.........400.........410.........420.........430.........440.
 
   290.........300.........310.........320.........330.........340.........
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Query Sequence  VVDFMGNLEVFLSFRPHERSLDIPGGPAEQYCSLARDLQLHAFLQFKQRLRSLVWQPLCS
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Template Sequence  LQSLATV. . . . . . FSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHE
Template Known Secondary structure  ......TS

SS
TSTTTT
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   442...... .450.........460.........470.........480.........490.....
 
   350.........360.........370.........380.........390.........400.........
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Query Sequence  LARALAGPQNLIKKRLDKLLDFDRVEEKLLDVGSVTWEEEAARHEYQALNSLLVAELPQF
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Template Sequence  YKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHF
Template Known Secondary structure  TTTTTTSS
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   496...500.........510.........520.........530.........540.........550.....
 
   410.........420.........430.........440.........
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Query Sequence  NQLVMQWLGQILCTFVVLQRDLADQVLRRAESTMALLPHH
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Template Sequence  HSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM
Template Known Secondary structure  TTS


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   556...560.........570.........580.........590.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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