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Job DescriptionA1IGU4
Confidence85.51%DateTue Jul 30 13:18:16 BST 2013
Rank294Aligned Residues184
% Identity9%Templatec3dyuB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:sorting nexin-9; PDBTitle: crystal structure of snx9px-bar (230-595), h32
Resolution4.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   266...270.........280.........290..... ....300.........310..
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Query Sequence  DKEFDDLEERFQWVSLCVKELRNNVVDFMG. . . . . . . . . . . . . NLEVFLSFRPHERSLDI
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Template Sequence  EQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQ
Template Known Secondary structure  TTTTS

S
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   396...400.........410.........420.........430.........440.........450.....
 
   313......320.........330....... ..340.........350.........360.........
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Query Sequence  PGGPAEQYCSLARDLQLHAFLQFKQ. . . RLRSLVWQPLCSLARALAGPQNLIKKRLDKLL
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Template Conservation      
   
                        
 
 
          
  
        
Template Sequence  GETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIE
Template Known Secondary structure  S
STSGGGTT
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   456...460.........470.........480.........490.........500.........510.....
 
   370.........380.........390.........400.........410.........420.........
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Query Sequence  DFDRVEEKLLDVGSVTWEEEAARHEYQALNSLLVAELPQFNQLVMQWLGQILCTFVVLQR
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Template Conservation        
                   
 
      
   
   
       
      

Template Sequence  KVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQV
Template Known Secondary structure  TTTTSS
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   516...520.........530.........540.........550.........560.........570.....
 
   430.........440.........
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Query Sequence  DLADQVLRRAESTMALLPHH
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Template Conservation           

     
   
Template Sequence  QFYETIAEKLRQALSRFPVM
Template Known Secondary structure  TTS


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   576...580.........590.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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