Return to main results Retrieve Phyre Job Id

Job DescriptionA1IGU4
Confidence85.08%DateTue Jul 30 13:18:16 BST 2013
Rank295Aligned Residues135
% Identity15%Templatec1m9sA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:internalin b; PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains.
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   510......... 520.........530.........540.........550...... ...560.......
Predicted Secondary structure 







.




































.










Query SS confidence 









.




































.










Query Sequence  LYQVSSNING. TGTLDLTLLRGQIVALLQNKDTKGNNSRWLVDTGGHR. GYVPAGKLQLY
Query Conservation     
      .     

   
  
 
    
  
             .
  
 
     
Alig confidence 









.

























.









.










Template Conservation 
 
 
  
           
                 . 
      
  



   

  
Template Sequence  VWTKPYNTAGAKHVNKLSVYQGKNMRILREAKTPITT. WYQFSIGGKVIGWVDTRALNTF
Template Known Secondary structure  BSSSSSSTT


GGGG
SS




SS
.TTTTT
Template Predicted Secondary structure 


















.




Template SS confidence 



























































   490.........500.........510.........520...... ...530.........540........
 
   568.570.........580.........590.........600.........610.........620.......
Predicted Secondary structure 




















































Query SS confidence 



























































Query Sequence  HPIIPSEKELRGQTGTHEDSWLPAPEPTQLSVPTVPTMSQVVAVYPFVARSTHELSLQAG
Query Conservation                                            




 
    



  
Alig confidence  ................











































Template Conservation  ................              
            
             
  
Template Sequence  . . . . . . . . . . . . . . . . YKQSMEKPTRLTRYVSANKAGESYYKVPVADNPVKRGTLAKYKN
Template Known Secondary structure  ................GGG

TTTTTSSSSS

GGGGGGSTT
Template Predicted Secondary structure  ................

























Template SS confidence 



























































   549550.........560.........570.........580.........590..
 
   628.630.........640......... 650.........660..
Predicted Secondary structure 







.



Query SS confidence 





















.












Query Sequence  QPVTILEAQDKKGNPEWSLVEA. NGQRGYVPSNFLA
Query Conservation 
 
 

   
      

 

 . 
  
 

 


 
Alig confidence 














.





.












Template Conservation    
 
 
 
     
.

 
       




  
 
Template Sequence  QKLIVDCQATIEGQL. WYRIRTSSTFIGWTKAANLR
Template Known Secondary structure 

TT.
SSSGGG
Template Predicted Secondary structure 




.




Template SS confidence 



































   593......600....... ..610.........620.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D