Return to main results Retrieve Phyre Job Id

Job DescriptionA1IGU4
Confidence99.49%DateTue Jul 30 13:18:16 BST 2013
Rank241Aligned Residues55
% Identity42%Templatec3rebD_
PDB info PDB header:protein bindingChain: D: PDB Molecule:tyrosine-protein kinase hck; PDBTitle: hiv-1 nef protein in complex with engineered hck-sh3 domain
Resolution3.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   607..610.........620.........630.........640......... 650.........660....
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Query Sequence  QVVAVYPFVARSTHELSLQAGQPVTILEAQDKKGNPEWSLVEA. . NGQRGYVPSNFLART
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Template Sequence  IVVALYDYVSWSPDDLSFQKGDQMVVLEES. . . . . GEWWKARSLATRKEGYIPSNYVARV
Template Known Secondary structure  SS
B

SSTTB

B
TT

S.....SSTTT

GGG
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   82.......90.........100.........110. ........120.........130......
 
   665.
Predicted Secondary structure 

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Query Sequence  PS
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Template Sequence  DS
Template Known Secondary structure 

Template Predicted Secondary structure 

Template SS confidence 

   137.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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