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Job DescriptionA1IGU4
Confidence96.09%DateTue Jul 30 13:18:16 BST 2013
Rank282Aligned Residues172
% Identity11%Templatec2q13A_
PDB info PDB header:protein transportChain: A: PDB Molecule:dcc-interacting protein 13 alpha; PDBTitle: crystal structure of bar-ph domain of appl1
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   267..270.........280.........290.........300..... ....310....
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Query Sequence  KEFDDLEERFQWVSLCVKELRNNVVDFMGNLEVFLSFRP. . . . . . . . . . . . HERSLDIPG
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Template Sequence  SLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLDEVMS
Template Known Secondary structure  TTTTS





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   21........30.........40.........50.........60.........70.........80
 
   315....320.........330.........340.........350... ......360.........370...
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Query Sequence  GPAEQYCSLARDLQLHAFLQFKQRLRSLVWQPLCSLARA. LAGPQNLIKKRLDKLLDFDR
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Template Sequence  STLQQFSKVIDELSS. CHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDA
Template Known Secondary structure  .TT
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   84.....90........ .100.........110.........120.........130.........140..
 
   374.....380... ......390.........400.........410.........420...
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Query Sequence  VEEKLLDVGS. . . . . . . . . . VTWEEEAARHEYQALNSLLVAELPQFNQLVMQWLGQILCT
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Template Sequence  AINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLG
Template Known Secondary structure  T

SSS

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   143......150.........160.........170.........180.........190.........200..
 
   424.....430.........
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Query Sequence  FVVLQRDLADQVLRRA
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Template Conservation          
       
Template Sequence  YMQAQISFFKMGSENL
Template Known Secondary structure  S
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   203......210........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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