Return to main results Retrieve Phyre Job Id

Job DescriptionA1IGU4
Confidence99.90%DateTue Jul 30 13:18:16 BST 2013
Rank45Aligned Residues191
% Identity15%Templatec1mv3A_
PDB info PDB header:endocytosis/exocytosisChain: A: PDB Molecule:myc box dependent interacting protein 1; PDBTitle: nmr structure of the tumor suppressor bin1: alternative2 splicing in melanoma and interaction with c-myc
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   475....480.........490.........500.........510.........520.........530....
Predicted Secondary structure 

























































Query SS confidence 



























































Query Sequence  QESFEKVLPPSTTQPLLPGSEHQMQALLTRYGPEKLYQVSSNINGTGTLDLTLLRGQIVA
Query Conservation                                        
           

   
  
 
Alig confidence 



























































Template Conservation         
 
     
       
       
 
  
                       
Template Sequence  EIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVP
Template Known Secondary structure 

























S








S






















Template Predicted Secondary structure 



























































Template SS confidence 



























































   278.280.........290.........300.........310.........320.........330.......
 
   535....540.........550.........560..... ....570.........580.........590.
Predicted Secondary structure 






























...

























Query SS confidence 






























. . .

























Query Sequence  LLQNKDTKGNNSRWLVDTGGHRGYVPAGKLQ. . . LYHPIIPSEKELRGQTGTHEDSWLPA
Query Conservation 
    
  
             
  
 
   ...                          
Alig confidence 






























...

























Template Conservation                                                              
Template Sequence  EISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEG
Template Known Secondary structure 

















SS







































Template Predicted Secondary structure 



























































Template SS confidence 



























































   338.340.........350.........360.........370.........380.........390.......
 
   592.......600.........610.........620.........630....... ..640.......
Predicted Secondary structure 






























.





...
Query SS confidence 













































.









. . .
Query Sequence  PEPTQLSVPTVPTMSQVVAVYPFVARSTHELSLQAGQPVTILEAQD. KKGNPEWSLV. . .
Query Conservation                    




 
    



  

 
 

   
.      

 
...
Alig confidence 













































.









...
Template Conservation                    




 
    



  



 

        



  
   
Template Sequence  GSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKE
Template Known Secondary structure 





SS

TT

SS
B


STT


B
SS



S
GGGS
TT
Template Predicted Secondary structure 









































Template SS confidence 



























































   398.400.........410.........420.........430.........440.........450.......
 
   648.650.........660.....
Predicted Secondary structure  .......





Query SS confidence  . . . . . . .

















Query Sequence  . . . . . . . EANGQRGYVPSNFLARTP
Query Conservation  .......
  
  
 

 


   
Alig confidence  .......

















Template Conservation            
  
 

 


    
Template Sequence  SDWNQHKKLEKCRGVFPENFTERVP
Template Known Secondary structure  TGGGGGGT
STT
Template Predicted Secondary structure 
















Template SS confidence 
























   458.460.........470.........480..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D