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Job DescriptionA1IGU4
Confidence93.72%DateTue Jul 30 13:18:16 BST 2013
Rank291Aligned Residues174
% Identity11%Templatec4akvB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:sorting nexin-33; PDBTitle: crystal structure of human sorting nexin 33 (snx33)
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   266...270.........280.........290.........300...... ...310.....
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Query Sequence  DKEFDDLEERFQWVSLCVKELRNNVVDFMGNLEVFLSFRPH. . . . . . . . . . ERSLDIPGG
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Template Conservation               
      
                                       
Template Sequence  EDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPF
Template Known Secondary structure  TTTS
GGG
Template Predicted Secondary structure 




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   375....380.........390.........400.........410.........420.........430....
 
   316...320......... 330.........340.........350.........360.........
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Query Sequence  PAEQYCSLARDLQL. . . . . . HAFLQFKQRLRSLVWQPLCSLARALAGPQNLIKKRLDKLL
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Template Conservation      
   
                          
 
          
           
Template Sequence  CSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFA
Template Known Secondary structure  S
TSTTTT
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   435....440.........450.........460.........470.........480.........490....
 
   370.........380.........390.........400.........410.........420.........
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Query Sequence  DFDRVEEKLLDVGSVTWEEEAARHEYQALNSLLVAELPQFNQLVMQWLGQILCTFVVLQR
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Template Conservation                   
        
 
   
  

  
   
   
   
      

Template Sequence  KVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQI
Template Known Secondary structure  TSS
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   495....500.........510.........520.........530.........540.........550....
 
   430.........
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Query Sequence  DLADQVLRRA
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Template Conservation           
Template Sequence  LFYQRVGQQL
Template Known Secondary structure 
Template Predicted Secondary structure 
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   555....560....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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