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Job DescriptionA1IGU4
Confidence96.89%DateTue Jul 30 13:18:16 BST 2013
Rank276Aligned Residues168
% Identity11%Templatec4fzsB_
PDB info PDB header:protein transportChain: B: PDB Molecule:sorting nexin-1; PDBTitle: structure of human snx1 bar domain
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   269270.........280.........290.........300.........310........ .320......
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Query Sequence  FDDLEERFQWVSLCVKELRNNVVDFMGNLEVFLSFRPHERSLDIPGGPAE. . QYCSLARD
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Template Sequence  FEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALS
Template Known Secondary structure  T


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   309310.........320.........330.........340.........350.........360........
 
   327..330.........340.........350.........360.........370.........380.
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Query Sequence  LQLHAFLQFKQRLRSLVWQPLCSLARALAGPQNLIKKRLDKLLDFDRVEEKLLDV. . . . .
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Template Sequence  QLAEVEEKIEQLDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEA
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TT
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   369370.........380.........390.........400.........410.........420........
 
   382.......390.........400.........410.........420.........430
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Query Sequence  . . . . . . . . . . . GSVTWEEEAARHEYQALNSLLVAELPQFNQLVMQWLGQILCTFVVLQRD
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Template Sequence  PDKLQQAKDEILEWESRVTQYERDFERISTVVRKESKDF. . . . . . . . KNHVIKYLETLLY
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   443......450.........460.........470.........480. ........490....
 
   431........440....
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Query Sequence  LADQVLRRAESTMA
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Template Sequence  SQQQLAKYWEAFLP
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   503......510......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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