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Job DescriptionA1IGU4
Confidence100.00%DateTue Jul 30 13:18:16 BST 2013
Rank34Aligned Residues201
% Identity23%Templatec3odxA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:rho guanine nucleotide exchange factor 1; PDBTitle: crystal structure of an n-terminally truncated linker-dh/ph domains of2 p115-rhogef
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.. .......70.........80..
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Query Sequence  RSLLHQRLAIRELIDTEVSYLHTLRLCASDIRSHLQQ. . . LPPGDLDILFSNIDDIIQVS
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Template Sequence  KSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAECLFFPLEELQNIFPSLDELIEVH
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   412.......420.........430.........440.........450.........460.........470.
 
   83......90.........100. ........110.........120.........130.........140
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Query Sequence  SRFLRGLQETACREEEQAH. . LIGNLFLEFQEEFEQVYKVYCANYDQALLLVKAYQKEPE
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Template Sequence  SLFLDRLMKRRQESIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDP
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   472.......480.........490.........500.........510.........520.........530.
 
   141........150.........160.........170.........180.........190.........200
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Query Sequence  LQKEIQGIIEAAMPQAGPSGLSFFLVIPLQRITKYPLLLQKILENTPADASAHPALQRAT
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Template Sequence  RFCAFVQEAES. RPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE. EPTEREKVELAA
Template Known Secondary structure  T.SGGGTT

TTTT

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   535....540..... ....550.........560.........570.........580 .........590..
 
   201........210.........220........
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Query Sequence  SALQDVNGNINEYKMRKEVALKYTKVEQ
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Template Sequence  ECCREILHHVNQAVRDMEDLLRLKDYQR
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   593......600.........610.........620
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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