Return to main results Retrieve Phyre Job Id

Job DescriptionA1A547
Confidence100.00%DateWed Jul 10 14:22:40 BST 2013
Rank3Aligned Residues158
% Identity32%Templated2f2la1
SCOP infoN-acetylmuramoyl-L-alanine amidase-like N-acetylmuramoyl-L-alanine amidase-like N-acetylmuramoyl-L-alanine amidase-like
Resolution2.10
Model Dimensions (Å)X:41.282 Y:41.522 Z:35.359

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   187..190.........200. ........210.........220.........230.........240....
Predicted Secondary structure 












..



















Query SS confidence 














. .










































Query Sequence  ITPRSAWEARETHCP. . QMNLPAKFVIIIHTAGKSCNESADCLVRVRDTQSFHIDNQDFC
Query Conservation 

 
  


 
    ..    
   






   
     
   

 

  
    

 
Alig confidence 














..




































.




Template Conservation 

 
  


 
           
  





               
 

  
 .  
  
Template Sequence  FVERQQWLAQPPQKEIPDLELPVGLVIALPTNSENCSTQAICVLRVRLLQTYDI. ESSQK
Template Known Secondary structure 
B
GGGGT



SS


B

SS

S


SS.TS

Template Predicted Secondary structure 




























.



Template SS confidence 



























































   355....360.........370.........380.........390.........400........ .410...
 
   245....250.........260.........270.. .......280.........290.........300..
Predicted Secondary structure 




















..












Query SS confidence 



























. .





























Query Sequence  DIAYHFLVGQDGEVYEGVGWNIEGSHTY. . GYNDIALGIAFMGNFVEKPPNEASLKAAQS
Query Conservation 







  

 





    


  ..
 
  




 

 
    

  
  
   
Alig confidence 



























..





























Template Conservation 

 


 
  

 
 


     
 

     
  



   
      

  
  

  
Template Sequence  DIAYNFLIGGDGNVYVGRGWNKMGAHMNNINYDSQSLSFAYIGSFKTIQPSAKQLSVTRL
Template Known Secondary structure 

S
S
TTS
SSTTTB


SSS
TT
SS

SSS


Template Predicted Secondary structure 



































Template SS confidence 



























































   415....420.........430.........440.........450.........460.........470....
 
   303......310.........320....... ..330.........340.....
Predicted Secondary structure 












..







Query SS confidence 
























. .

















Query Sequence  LIQCAVAKGYLTSNYLLMGHSDVSN. . ILSPGQALYNIIKTWPHF
Query Conservation 

      
 
 
 
 
 



   ..
 


  

  
  
 
 
Alig confidence 
























..

















Template Conservation 

        
     
 



     
 


  

  
  
   
Template Sequence  LLERGVKLGKIAPSYRFTASSKLMPSVTDFKADALYASFANWTHW
Template Known Secondary structure  TTS
TT
GGG

TTTT
TTB
Template Predicted Secondary structure 



















Template SS confidence 












































   475....480.........490.........500.........510.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D