Return to main results Retrieve Phyre Job Id

Job DescriptionA1A547
Confidence100.00%DateWed Jul 10 14:22:40 BST 2013
Rank12Aligned Residues157
% Identity31%Templatec3ep1B_
PDB info PDB header:immune systemChain: B: PDB Molecule:pgrp-hd - peptidoglycan recognition protein PDBTitle: structure of the pgrp-hd from alvinella pompejana
Resolution2.10 Å
Model Dimensions (Å)X:43.395 Y:43.721 Z:37.409

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   184.....190......... 200.........210......... 220.........230.........
Predicted Secondary structure 













.














...


Query SS confidence 















.



















. . .



















Query Sequence  CPNITPRSAWEARETH. CPQMNLPAKFVIIIHTAGKS. . . CNESADCLVRVRDTQSFHID
Query Conservation   
 

 
  


 
  .      
   






   ...
     
   

 

  
  
Alig confidence 















.



















...



















Template Conservation   
 

 
  


  
            





       
             
   
 
Template Sequence  ADSIVPRQQWAAIEPRRQIKMNGRADEIFLWQTGPDTCSGCLQDSSCTEQIVKALQDADF
Template Known Secondary structure 



B
TTTTT



S


B
SS


TTTT

TTTTTTT
Template Predicted Secondary structure 































Template SS confidence 



























































   75....80.........90.........100.........110.........120.........130....
 
   240.........250.........260.........270.........280.........290.........
Predicted Secondary structure 





































Query SS confidence 



























































Query Sequence  NQDFCDIAYHFLVGQDGEVYEGVGWNIEGSHTYGYNDIALGIAFMGNFVEKPPNEASLKA
Query Conservation    

 







  

 





    


  
 
  




 

 
    

  
  
Alig confidence 



























































Template Conservation    

 





 
  

 




     


    
  



  

      

 

  
Template Sequence  KEGNDDIKYNFLIDQDGVIYEGRGWGVVGQHTKGRDSHSIGVAVIGDFGKKEPSQALQDA
Template Known Secondary structure  TT
SS
S
S
TTS
SS
TTB

SSSTT

TTSS

SSS


Template Predicted Secondary structure 





































Template SS confidence 



























































   145....150.........160.........170.........180.........190.........200....
 
   300.........310.........320.........330.........340.....
Predicted Secondary structure 




















Query SS confidence 













































Query Sequence  AQSLIQCAVAKGYLTSNYLLMGHSDVSNILSPGQALYNIIKTWPHF
Query Conservation     

      
 
 
 
 
 



   
 


  

  
  
 
 
Alig confidence 















.....
























Template Conservation     

        
  .....


    
 


  

  
  
 
 
Template Sequence  LSKLIICGQAAEELSS. . . . . GARLRTTPAMSGQAFYDMLDRCDGL
Template Known Secondary structure  TTS.....


TTSS
Template Predicted Secondary structure 





.....













Template SS confidence 













































   205....210.........220 .........230.........240.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D