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Job DescriptionQ99M51
Confidence75.60%DateTue Jul 30 13:14:31 BST 2013
Rank336Aligned Residues153
% Identity16%Templatec3m1uB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  NYMAEREDELSLIKGTKVIVMEKCSDG. WWRGSYNGQIGWFPSNYVTEEGDSPLGDHVGS
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Template Sequence  GYPFDXFQRTAVWXGTPVFVGHATADRAWLYVETAFAAGWXPAADVARVDDAFXTRYESG
Template Known Secondary structure  STT

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   175....180.........190.........200.........210.........220.........230....
 
   175....180.........190.........200.........210.........220.........230....
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Query Sequence  LSEKLAAVVNNLNTGQVLHVVQALYPFSSSNDEELNFEKGDVMDVIEKPENDPEWWKCRK
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Template Sequence  SLAAILRDDTSLNGADGTHLA. . . . . . . . . . . . . . TAHIGTVLPLSGA. . SQVGRTVLVP
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   235....240.........250..... ....260........ .270........
 
   235....240.........250.........260.........270.........280........
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Query Sequence  INGMVGLVPKNYVTIMQNNPLTSGLEPSPPQCDYIRPSLTGKFAGNPWYYGKVT
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Template Sequence  VRAPEGHAVVVPVLL. . . . TSGEAAQKPVPLTPGNXAELGNRXXGQPYGWGGLY
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   279280.........290... ......300.........310.........320........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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