Phyre 2 alignment of Q99M51 with c1x6bA_

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Job Description | Q99M51
Confidence | 99.70% | Date | Tue Jul 30 13:14:31 BST 2013
Rank | 141 | Aligned Residues | 62
% Identity | 15% | Template | c1x6bA_
PDB info | PDB header:signaling protein | Chain: A: PDB Molecule:rho guanine exchange factor (gef) 16; | PDBTitle: solution structures of the sh3 domain of human rho guanine2 exchange factor (gef) 16
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . |  | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | E | E | V | V | V | V | A | K | F | D | Y | V | A | Q | Q | E | Q | E | L | D | I | K | K | N | E | R | L | W | L | L | D | D | S | K | S | W | W | R | V | R | N | . | S | M | N | K | T | G | F | V | P | S | N | Y | V | E | R | K | N
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | D | L | P | Q | V | E | I | T | K | A | F | F | A | K | Q | A | D | E | V | T | L | Q | Q | A | D | V | V | L | V | L | Q | Q | E | D | G | W | L | Y | G | E | R | L | R | D | G | E | T | G | W | F | P | E | D | F | A | R | F | I | S
Template Known Secondary structure |  | S | S |  |  |  |  |  |  | S | S |  |  |  |  |  | S | S | S | B |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  | T | T | T |  |  |  |  |  |  |  | G | G | G |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | .
|  | 61 | . | .
Predicted Secondary structure |  |  |  |
Query SS confidence |  |  |  |
Query Sequence |  | S | A | R
Query Conservation |  |  |  |
Alig confidence |  |  |  |
Template Conservation |  |  |  |
Template Sequence |  | G | P | S
Template Known Secondary structure |  | S | S |
Template Predicted Secondary structure |  |  |  |
Template SS confidence |  |  |  |
|  | 75 | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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