Job Description A0JP43 Confidence 97.69% Date Tue Jul 30 13:08:59 BST 2013 Rank 6 Aligned Residues 172 % Identity 16% Template c3vkhA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic; PDBTitle: x-ray structure of a functional full-length dynein motor domain Resolution 3.80 Å Model Dimensions (Å) X:96.542 Y:36.476 Z:107.763

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		1173	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.		.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		I	G	R	S	R	M	L	L	Y	Q	E	Y	K	D	L	Q	K	M	V	K	M	I	Q	N	V	S	Y	E	I	L	G	E	F	S	.	G	E	I	E	K	T	M	V	I	E	M	E	S	A	G	E	V	K	R	A	G	I	L	F	F
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		V	K	D	L	Q	V	S	L	A	Q	K	N	R	E	L	D	V	K	N	E	Q	A	N	Q	K	L	K	Q	M	V	Q	D	Q	Q	A	A	E	I	K	Q	K	D	A	R	E	L	Q	V	Q	L	D	V	R	N	K	E	I	A	V	Q
Template Known Secondary structure																									T													T					T	S	G	G	G	G	G	T	T	T						T
Template Predicted Secondary structure
Template SS confidence
		3299	3300	.	.	.	.	.	.	.	.	.	3310	.	.	.	.	.	.	.	.	.	3320	.	.	.	.	.	.	.	.	.	3330	.	.	.	.	.	.	.	.	.	3340	.	.	.	.	.	.	.	.	.	3350	.	.	.	.	.	.	.	.
		1232	.	.												.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	M	.	.	.	.	.	.	.	.	.	.	.	L	Q	E	L	Q	E	C	L	C	L	L	D	S	M	D	F	V	S	L	L	L	Y	E	H	K	Y	H	V	D	S	I	L	Q	D	I	T	L	Q	E	V	E	A	N	V	A	L
Query Conservation					.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	K	A	Y	A	D	L	E	K	A	E	P	A	I	I	E	A	Q	E	A	V	S	T	I	K	K	K	H	L	D	E	I	K	S	L	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	T	P
Template Known Secondary structure									G	G	G	T	S	T											S													S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3359	3360	.	.	.	.	.	.	.	.	.	3370	.	.	.	.	.	.	.	.	.	3380	.	.	.	.	.	.	.	.	.	3390	.	.	.	.	.	.																			.	.	.	3400
		1281	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.		.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		V	H	D	V	L	K	G	V	I	L	F	S	Q	R	E	K	D	S	L	S	D	L	E	E	W	E	K	W	K	F	H	I	N	K	.	Y	L	V	E	E	I	C	V	L	D	P	T	A	S	N	V	E	V	N	V	E	L	V	T	S
Query Conservation																																				.
Alig confidence																		.	.	.	.	.	.													.
Template Conservation																		.	.	.	.	.	.
Template Sequence		V	K	L	A	M	E	A	V	C	L	M	L	G	G	K	K	.	.	.	.	.	.	L	E	W	A	D	I	R	K	K	I	M	E	P	N	F	I	T	S	I	I	N	Y	D	T	K	K	M	M	T	P	K	I	R	E	A	I	T	K
Template Known Secondary structure													T	T				.	.	.	.	.	.									G	G	G		T	T							T			T	T				T	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.
Template SS confidence
		3401	.	.	.	.	.	.	.	.	3410	.	.	.	.	.	.							.	.	.	3420	.	.	.	.	.	.	.	.	.	3430	.	.	.	.	.	.	.	.	.	3440	.	.	.	.	.	.	.	.	.	3450	.	.	.	.
		1340	.	.	.	.	.	.			.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		Y	I	Q	A	H	S	R	.	.	T	E	V	W	N	F	R	N	I	V	I	E	L	L	Y	H	W	I	N	I	C	L
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence		G	Y	L	E	D	P	G	F	D	Y	E	T	V	N	R	A	S	K	A	C	G	P	L	V	K	W	A	T	A	Q	T
Template Known Secondary structure			T	T	T		T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		3455	.	.	.	.	3460	.	.	.	.	.	.	.	.	.	3470	.	.	.	.	.	.	.	.	.	3480	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D