Job Description A0JP43 Confidence 21.10% Date Tue Jul 30 13:08:59 BST 2013 Rank 150 Aligned Residues 79 % Identity 18% Template c3so6A_ PDB info PDB header:protein binding/protein transport Chain: A: PDB Molecule:ldl receptor adaptor protein; PDBTitle: crystal structure of the ldl receptor tail in complex with autosomal2 recessive hypercholesterolemia ptb domain Resolution 1.37 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		967	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	I	S	F	T	V	V	D	E	G	K	P	I	H	V	P	Q	V	Q	H	H	G	N	I	F	F	W	N	S	F	R	S	K	N	E	Y	N	G	S	F	L	A	L	P	L	Q	D	A	Y	M	R	I	F	G	V	L	A	V	D
Query Conservation
Alig confidence																		.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	G	I	I	L	T	D	S	L	T	S	Q	L	I	E	N	.	.	.	V	S	I	Y	R	I	S	Y	C	T	A	D	K	M	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	V	F	A	Y	I	A	Q	S
Template Known Secondary structure		T							T	T	T							.	.	.			G	G	G								S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																		.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.																	.	.	.	.	.	130	.	.	.	.
		1027	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	R	D	P	H	E	I	N	I	F	L	P	H	E	I	K	F	Y	Q	G	V	A	N	A	F	S	T	A	Y	H	H	V	H	S	R	E	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	N	E	S	L	E	C	H	A	F	L	C	T	K	R	K	V	A	Q	A	V	T	L	T	V	A	Q	A	F	K	V	A	F	E	F	W	Q
Template Known Secondary structure		S	S	S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D