Job Description A0JP43 Confidence 98.74% Date Tue Jul 30 13:08:59 BST 2013 Rank 1 Aligned Residues 119 % Identity 14% Template c3j1uA_ PDB info PDB header:motor protein/structural protein Chain: A: PDB Molecule:cytoplasmic dynein 1 heavy chain 1, seryl t-rna synthetase PDBTitle: low affinity dynein microtubule binding domain - tubulin complex Resolution 9.70 Å Model Dimensions (Å) X:42.176 Y:41.990 Z:33.883

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		1234	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	Q	E	L	Q	E	C	L	C	L	L	D	S	M	D	F	V	S	L	L	L	Y	E	H	K	Y	H	V	D	S	I	L	Q	D	I	T	L	Q	E	V	E	A	N	V	A	L	V	H	D	V	L	K	G	V	I	L	F	S	Q
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	I	E	A	Q	N	A	V	K	S	I	K	K	Q	H	L	V	E	V	R	S	M	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	A	A	V	K	L	A	L	E	S	I	C	L	L	L	G
Template Known Secondary structure												T			T										S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3286	.	.	.	3290	.	.	.	.	.	.	.	.	.	3300	.	.	.	.	.	.	.	.	.	3310																			.	.	.	.	.	.	.	.	.	3320	.	.	.	.	.	.	.
		1294	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.		1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.		.	.	1350	.
Predicted Secondary structure																		.																																							.
Query SS confidence																		.																																							.
Query Sequence		R	E	K	D	S	L	S	D	L	E	E	W	E	K	W	K	.	F	H	I	N	K	Y	L	V	E	E	I	C	V	L	D	P	T	A	S	N	V	E	V	N	V	E	L	V	T	S	Y	I	Q	A	H	S	R	T	.	E	V	W	N
Query Conservation																		.																																							.
Alig confidence			.	.	.	.	.	.										.																																							.
Template Conservation			.	.	.	.	.	.
Template Sequence		E	.	.	.	.	.	.	S	T	T	D	W	K	Q	I	R	S	I	I	M	R	E	N	F	I	P	T	I	V	N	F	S	A	E	E	I	S	D	A	I	R	E	K	M	K	K	N	Y	M	S	N	P	S	Y	N	Y	E	I	V	N
Template Known Secondary structure			.	.	.	.	.	.									G	G	G	G	G		T	T							T			T	T	T	S												T	T	T		G	G	G	S
Template Predicted Secondary structure			.	.	.	.	.	.
Template SS confidence
		3328							.	3330	.	.	.	.	.	.	.	.	.	3340	.	.	.	.	.	.	.	.	.	3350	.	.	.	.	.	.	.	.	.	3360	.	.	.	.	.	.	.	.	.	3370	.	.	.	.	.	.	.	.	.	3380	.
		1352	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	N	I	V	I	E	L	L	Y	H	W	I	N	I	C	L	T	L	I	E	L	N	M	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	S	L	A	C	G	P	M	V	K	W	A	I	A	Q	L	N	Y	A	D	M	L	K	R
Template Known Secondary structure					T	T	T
Template Predicted Secondary structure
Template SS confidence
		3382	.	.	.	.	.	.	.	3390	.	.	.	.	.	.	.	.	.	3400	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D