Job Description A0JP43 Confidence 66.37% Date Tue Jul 30 13:08:59 BST 2013 Rank 66 Aligned Residues 151 % Identity 16% Template c3ig3A_ PDB info PDB header:signaling protein, membrane protein Chain: A: PDB Molecule:plxna3 protein; PDBTitle: crystal strucure of mouse plexin a3 intracellular domain Resolution 1.99 Å

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		1182	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	Y	K	D	L	Q	K	M	V	K	M	I	Q	N	V	S	Y	E	I	L	G	E	F	S	G	E	I	E	K	T	M	V	I	E	M	E	S	A	G	E	V	K	R	A	G	I	L	F	F	R	T	M	L	Q	E	L	Q	E	C
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Sequence		D	A	D	R	T	L	K	R	L	Q	L	Q	M	D	N	L	E	S	R	V	A	L	E	C	K	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	E	L	Q	.	T	D	I	N	E	L
Template Known Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template SS confidence
		1249	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.																						.	.	.	.	1280		.	.	.	.	.	.
		1242	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.									.	.	.	.	1290	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.
Query Sequence		L	C	L	L	D	S	M	D	F	V	S	L	L	L	Y	E	H	K	Y	H	V	D	S	I	L	Q	D	I	T	L	Q	E	V	E	A	N	V	A	L	V	H	D	V	L	.	.	.	.	.	.	.	.	K	G	V	I	L	F	S	Q
Query Conservation																																														.	.	.	.	.	.	.	.
Alig confidence							.																																							.	.	.	.	.	.	.	.
Template Conservation							.
Template Sequence		T	N	H	V	Q	.	I	P	F	L	D	Y	R	T	Y	A	V	R	V	L	F	P	G	I	E	A	H	P	V	L	K	E	L	D	T	P	P	N	V	E	K	A	L	R	L	F	G	Q	L	L	H	S	R	A	F	L	L	T	F	I
Template Known Secondary structure		S					.			B												S	T	T		T	T		G	G	G	S																			T	T
Template Predicted Secondary structure							.
Template SS confidence
		1287	.	.	1290	.		.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.
		1294	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310														.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	K	D	S	L	S	D	L	E	E	W	E	K	W	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	H	I	N	K	Y	L	V	E	E	I	C	V	L	D	P	T	A	S	N	V	E	V	N	V	E	L	V	T	S	Y
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	T	L	E	A	Q	S	S	F	S	M	R	D	R	G	T	V	A	S	L	T	M	V	A	L	Q	S	R	L	D	Y	A	T	G	L	L	K	Q	L	L	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	E	K	N
Template Known Secondary structure						T		T	T																	T	G	G	G															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1349	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390														.	.	.	.	.
		1341	.			.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		I	Q	.	.	A	H	S	R	T	E	V	W	N	F	R	N	I	V	I	E	L	L	Y	H	W	I	N	I	C	L
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		L	E	S	K	N	H	P	K	L	L	L	R	R	T	E	S	V	A	E	K	M	L	T	N	W	F	T	F	L	L
Template Known Secondary structure				T	T			S	T	T	T	T	T	S																	T
Template Predicted Secondary structure
Template SS confidence
		1396	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D