Job Description A0JP43 Confidence 40.41% Date Tue Jul 30 13:08:59 BST 2013 Rank 85 Aligned Residues 179 % Identity 9% Template c3c2wB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of the photosensory core domain of p. aeruginosa2 bacteriophytochrome pabphp in the pfr state Resolution 2.90 Å

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		969	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	F	T	V	V	D	E	G	K	P	I	H	V	P	Q	V	Q	H	H	G	N	I	F	F	W	N	S	F	R	S	K	N	E	Y	N	G	S	F	L	A	L	P	L	Q	D	A	Y	M	R	I	F	G	V	L	A	V	D	T	L
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.											.														.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.											.														.
Template Sequence		L	S	Y	S	V	L	R	S	V	S	P	I	H	C	E	Y	L	T	N	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	A	S	M	S	I	S	I	V	.	V	G	G	K	L	W	G	L	F	S	C	H	H	.
Template Known Secondary structure			T	T		S	S	B														T	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.		T	T											.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.											.														.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.															.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.
		1029	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.			1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		R	D	P	H	E	I	N	I	F	L	P	H	E	I	K	F	Y	Q	G	V	A	N	A	F	S	T	A	Y	H	H	V	H	S	R	E	H	V	L	H	S	V	.	.	M	T	G	I	R	W	L	F	S	V	T	S	G	I	T	T	I
Query Conservation																																											.	.
Alig confidence						.	.	.																																			.	.
Template Conservation						.	.	.
Template Sequence		M	S	P	K	.	.	.	L	I	P	Y	P	V	R	M	S	F	Q	I	F	S	Q	V	C	S	A	I	V	E	R	L	E	Q	G	R	I	A	E	L	L	R	V	S	T	E	R	R	L	A	L	A	R	R	A	R	D	A	D	D	L
Template Known Secondary structure		S	S			.	.	.											T	T																																		S	T	T	T	S	S		T
Template Predicted Secondary structure						.	.	.
Template SS confidence
		279	280	.	.				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		1087	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	C	F	I	E	P	S	S	E	Q	E	D	Y	V	L	R	N	M	M	V	T	D	C	L	G	L	A	E	I	H	T	D	P	P	T	I	T	R	N	A	C	I	F	R	D	F	L	F	K	C	T	D	T	S	E	V	I	L	A
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence		F	G	A	L	A	H	P	D	D	G	I	A	A	L	I	P	C	D	G	A	L	V	M	L	G	G	R	T	L	S	I	R	G	D	F	E	R	Q	.	A	G	N	V	L	Q	R	L	Q	R	D	P	E	R	D	I	Y	H	T	D	N
Template Known Secondary structure								S	S	S	S	S	T	T	T	S			S							T	T						S	S						.						T	T	S	S	S		S	S							S
Template Predicted Secondary structure																																								.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		1147	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	G	G	E	T	H	I	A	I	P	L	R	Q	R	T	K	E	A	M	G	I	L
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		W	C	C	G	.	.	V	L	A	I	R	F	H	R	Q	E	S	G	W	I	F	W	F
Template Known Secondary structure						.	.								T	T	T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		395	.	.	.			.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D