Job Description A0JP43 Confidence 96.36% Date Tue Jul 30 13:08:59 BST 2013 Rank 20 Aligned Residues 112 % Identity 19% Template c2vjwA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:gaf family protein; PDBTitle: crystal structure of the second gaf domain of devs from2 mycobacterium smegmatis Resolution 2.0 Å Model Dimensions (Å) X:51.361 Y:38.966 Z:37.895

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		934	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	L	P	E	R	G	H	V	L	L	R	N	V	A	C	T	L	D	D	A	P	F	V	L	N	K	V	L	Y	R	D	M	K	G	I	S	F	T	V	V	D	E	G	K	P	I	H	V	P	Q	V	Q	H	H	G	N	I	F	F
Query Conservation
Alig confidence																																		.																										.	.
Template Conservation																																		.																										.	.
Template Sequence		V	A	V	P	A	D	A	A	E	E	L	V	I	V	E	V	A	G	A	V	P	A	E	V	E	A	S	A	I	P	V	Q	.	D	N	A	I	G	Q	A	F	R	D	R	A	P	R	R	L	D	V	L	D	G	P	G	L	G	.	.
Template Known Secondary structure										S										T	S		G	G	G	T	T					S	S	.	S	S															S				T	T	S			.	.
Template Predicted Secondary structure																																		.																										.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		994	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	N	S	F	R	S	K	N	E	Y	N	G	S	F	L	A	L	P	L	Q	D	A	Y	M	R	I	F	G	V	L	A	V	D	T	L	R	D	P	H	E	I	N	I	F	L	P	H	E	I	K	F	Y	Q	G	V	A	N	A	F	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.										.																			.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.										.																			.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	G	P	A	L	V	L	P	L	R	.	A	T	D	T	V	A	G	V	L	V	A	V	Q	G	S	G	A	R	.	.	.	P	F	T	A	E	Q	L	E	X	X	T	G	F	A	D	Q	A	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.										.		T	T												T	T			.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.										.																			.	.	.
Template SS confidence
													316	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		1054	.	.	.	.	.	1060	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	Y	H	H	V	H	S	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	W	Q	L	A	S	S	Q	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D