Job Description A0JP43 Confidence 83.68% Date Tue Jul 30 13:08:59 BST 2013 Rank 56 Aligned Residues 148 % Identity 14% Template c2au3A_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains) Resolution 2.00 Å

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		989	990	.	.	.	.		.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		G	N	I	F	F	W	.	N	S	F	R	S	K	N	E	Y	N	G	S	F	L	A	L	P	L	Q	D	A	Y	M	R	I	F	G	V	L	A	V	D	T	L	R	D	P	H	E	I	N	I	F	L	P	H	E	I	K	F	Y	Q	G
Query Conservation								.
Alig confidence								.						.	.														.							.	.	.																	.
Template Conservation														.	.														.							.	.	.																	.
Template Sequence		G	S	N	Y	R	T	N	C	P	F	H	P	.	.	D	D	T	P	S	F	Y	V	S	P	S	K	Q	.	I	F	K	C	F	G	.	.	.	C	G	V	G	G	D	A	I	K	F	V	S	L	Y	E	D	.	I	S	Y	F	E	A
Template Known Secondary structure		T	T							S	S	S		.	.		S	S							T	T	T	T	.					T	T	.	.	.	T															T	.
Template Predicted Secondary structure														.	.														.							.	.	.																	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80
		1048	.	1050	.	.	.	.	.	.	.																				.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	N	A	F	S	T	A	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	H	S	R	E	H	V	L	H	S	V	M	T	G	I	R	W	L	F	S	V	T	S	G	I	T	T	I	T	T
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	E	L	A	K	R	Y	G	K	K	L	D	L	E	K	I	S	K	D	E	K	V	Y	V	A	L	D	R	V	C	D	F	Y	R	E	S	L	L	K	N	R	E	A	S	E	Y	V	K	S	R	G	I	D	P	K	V	A	R	K
Template Known Secondary structure										T					T	T	S																																			T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		1089	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	F	I	E	P	S	S	E	Q	E	D	Y	V	L	R	N	M	M	V	T	D	C	L	G	L	A	E	I	H	T	D	P	P	T	I	T	R	N	A	C	I	F	R	D	F	L	F	K	C	T	D	T	S	E	V	I	L	A	S	S
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Sequence		F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	G	Y	A	P	S	S	E	A	L	V	K	V	L	K	E	N	D	L	L	E	A	Y	L	E	T	K	N	.	.	.	.	.	L	L	S	P	T
Template Known Secondary structure		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																		T							T	T	T		.	.	.	.	.				S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template SS confidence
		141																					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170						.	.	.	.	.
		1149	1150	.	.	.							.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.
Query Sequence		G	G	E	T	H	.	.	.	.	.	.	I	A	I	P	L	R	Q	R	T	K	E	A	M	G	I
Query Conservation							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.
Template Conservation
Template Sequence		K	G	V	Y	R	D	L	F	L	R	R	V	V	I	P	I	K	D	P	R	G	R	V	I	G	F
Template Known Secondary structure		T	T					T	T	T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D