Job Description A2A4P0 Confidence 99.77% Date Wed Jul 10 14:06:11 BST 2013 Rank 37 Aligned Residues 314 % Identity 19% Template c4gl2A_ PDB info PDB header:rna binding protein/rna Chain: A: PDB Molecule:interferon-induced helicase c domain-containing protein 1; PDBTitle: structural basis for dsrna duplex backbone recognition by mda5 Resolution 3.56 Å

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		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.						630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.
Query SS confidence																																							.	.	.	.	.
Query Sequence		K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	.	.	.	.	.	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A
Query Conservation																																							.	.	.	.	.
Alig confidence																																							.	.	.	.	.
Template Conservation
Template Sequence		P	Y	Q	M	E	V	A	Q	P	A	L	E	G	K	N	I	I	I	C	L	P	T	G	C	G	K	T	R	V	A	V	Y	I	A	K	D	H	L	D	K	K	K	K	A	S	E	P	G	K	V	I	V	L	V	N	K	V	L	L	V
Template Known Secondary structure													S	S									T	T	S																					T					B					S		S
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		648	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.		.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	.	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I
Query Conservation																												.
Alig confidence																												.																								.
Template Conservation																																																				.
Template Sequence		E	Q	L	F	R	K	E	F	Q	P	F	L	K	K	W	Y	R	V	I	G	L	S	L	K	I	S	F	P	E	V	V	K	S	C	D	I	I	I	S	T	A	Q	I	L	E	N	S	L	L	G	.	V	Q	L	S	D	F	S	L	I
Template Known Secondary structure								T						T	T	T	S																	S		S													T			.			G	G	G		S
Template Predicted Secondary structure																																																				.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.
		707	.	.	710	.	.	.								.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.			.	.	.	.	.	.	.	740	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.																				.	.														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.																				.	.														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	L	D	E	A	H	E	.	.	.	.	.	.	.	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	.	.	Q	D	M	K	L	I	V	T	S	A	T	L	D	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.	.	.	.	.	.																				.	.														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.																				.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	D	E	C	H	H	T	N	K	E	A	V	Y	N	N	I	M	R	H	Y	L	M	Q	K	L	K	N	N	R	L	K	K	V	I	P	L	P	Q	I	L	G	L	T	A	S	P	G	V	G	G	A	T	K	Q	A	K	A	E	E
Template Known Secondary structure					S	G	G	G		B	T	T	B	S	S		S																													S						S			S
Template Predicted Secondary structure
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
			746	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.									.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																				.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Query SS confidence		.																				.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Query Sequence		.	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	.	.	.	.	.	.	.	.	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	.	.	.	.	.	.	.
Query Conservation		.																				.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Alig confidence		.																				.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	I	L	K	L	C	A	N	L	D	A	F	T	I	K	T	V	K	E	N	L	D	Q	L	K	N	Q	I	Q	E	P	C	K	K	F	A	I	A	D	P	F	K	E	K	L	L	E	I	M	T	R	I	Q	T	Y	C	Q	M	S	P
Template Known Secondary structure											T		S							T	T								S																													T
Template Predicted Secondary structure
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	S	D	F	G	T	Q	P	Y	E	Q	W	A	I	Q	M	E	K	K	A	A	K	E	G	N	R	K	E	R	V	C	A	E	H	L	R	K	Y	N	E	A	L	Q	I	N	D	T	I	R	M	I	D	A	Y	T	H	L	E	T	F
Template Known Secondary structure			S		S	S	S																		T		T	T	T																				S
Template Predicted Secondary structure
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
																																																	790	.	.	.	.	.	.	.	.	.	800	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	H	L	T	E	P	P	G	D	I	L	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	N	E	E	K	D	K	K	F	L	D	E	T	D	R	F	L	M	T	L	F	F	E	N	N	K	M	L	K	R	L	A	E	N	P	E	K	L	T	K	L	R	N	T	I	M	E	Q	Y	T	R	T	E	E	S	A	R	G	I	I
Template Known Secondary structure																																		T					S	S		S											S	S	S
Template Predicted Secondary structure
Template SS confidence
		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A
Query Conservation
Alig confidence																																																							.	.	.
Template Conservation																																																							.	.	.
Template Sequence		F	T	K	T	R	Q	S	A	Y	A	L	S	Q	W	I	T	E	N	E	K	F	A	A	H	H	L	I	G	A	G	H	S	S	E	F	K	P	M	T	Q	N	E	Q	K	E	V	I	S	K	F	R	T	N	.	.	.	L	L	I	A
Template Known Secondary structure				S														S	S		S									S				T	T																				.	.	.		S
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		724	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.				.	.	.	780
		863	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	P	G	K
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																			.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		T	T	V	A	E	E	G	L	D	I	K	E	C	N	I	V	I	.	.	.	.	.	.	.	.	R	Y	G	L	.	.	.	.	.	.	.	.	.	.	V	T	N	E	I	A	M	V	Q	A	R	G	R	A	R	A	D	E	.	S	T
Template Known Secondary structure				S			T	T	S				S						.	.	.	.	.	.	.	.			S		.	.	.	.	.	.	.	.	.	.												T	T	S		S	S	S	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
		789	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.									.	.	.	.											810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.		.	.
		923	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Y	R	L	Y	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	V	L	V	A	H	S
Template Known Secondary structure								S
Template Predicted Secondary structure
Template SS confidence
		830	.	.	.	.	.	.