Job Description A2A4P0 Confidence 99.96% Date Wed Jul 10 14:06:11 BST 2013 Rank 20 Aligned Residues 488 % Identity 20% Template c4f92B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:u5 small nuclear ribonucleoprotein 200 kda helicase; PDBTitle: brr2 helicase region s1087l Resolution 2.66 Å Model Dimensions (Å) X:73.509 Y:70.354 Z:60.282

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		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.		.	.	.	.	.	.	.	610	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		N	D	I	P	E	W	K	K	H	A	F	G	G	N	K	A	S	Y	G	K	K	T	Q	M	S	I	L	E	Q	R	E	S	L	P	I	Y	K	L	K	E	Q	L	V	Q	A	V	.	H	D	N	Q	I	L	I	V	I	G	E	T	G
Query Conservation																																																.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	L	P	K	Y	A	Q	A	G	F	E	G	F	K	T	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	Q	S	K	L	Y	R	A	A	L	E	T	D	E	N	L	L	L	C	A	P	T	G
Template Known Secondary structure		T	T	S		G	G	G	S	T	T		T	T		S	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T						T											T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.																			.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
		616	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.												.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	.	.	.	.	.	.	.	.	.	.	.	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.														.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation					.																																																				.
Template Sequence		A	G	K	.	T	N	V	A	L	M	C	M	L	R	E	I	G	K	H	I	N	M	D	G	T	I	N	V	D	D	F	K	I	I	Y	I	A	P	M	R	S	L	V	Q	E	M	V	G	S	F	G	K	R	L	A	.	T	Y	G	I
Template Known Secondary structure		S			.													G	G	G			T	T	S	S			T	T	S								S	S																T	.	T	T	T
Template Predicted Secondary structure					.																																																				.
Template SS confidence
		507	.	.		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560		.	.	.	.
		665	.	.	.	.				670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.				.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.					.	.
Predicted Secondary structure							.	.	.																				.	.	.																									.	.	.	.
Query SS confidence							.	.	.																				.	.	.																									.	.	.	.
Query Sequence		E	V	G	Y	T	.	.	.	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	.	.	.	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	.	.	.	.	E	R
Query Conservation							.	.	.																				.	.	.																									.	.	.	.
Alig confidence							.	.	.																				.	.	.																									.	.	.	.
Template Conservation
Template Sequence		T	V	A	E	L	T	G	D	H	Q	L	C	K	E	E	I	S	A	T	Q	I	I	V	C	T	P	E	K	W	D	I	I	T	R	K	G	G	E	R	T	Y	T	Q	L	V	R	L	I	I	L	D	E	I	H	L	L	H	D	D	R
Template Known Secondary structure								S	S		S	S			T	T	G	G	G		S													T	T	S	S	T	T					T	T							T	T	G	G	G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		565	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.
		715	.	.	.	.	720	.	.	.		.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.		.	.	.	.	.	750	.	.	.	.	.	.	.						.	.	760	.	.	.	.	.	.	.
Predicted Secondary structure											.																						.														.	.	.	.	.
Query SS confidence											.																						.														.	.	.	.	.
Query Sequence		T	I	H	T	D	V	L	F	G	.	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	.	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	.	.	.	.	.	I	F	T	I	P	G	R	T	Y	P
Query Conservation											.																						.														.	.	.	.	.
Alig confidence											.																						.														.	.	.	.	.
Template Conservation
Template Sequence		G	P	V	L	E	A	L	V	A	R	A	I	R	N	I	E	M	T	Q	E	D	V	R	L	I	G	L	S	A	T	L	P	N	Y	E	D	V	A	T	F	L	R	V	D	P	A	K	G	L	F	Y	F	D	N	S	F	R	P	V	P
Template Known Secondary structure																				T											S		T	T								T	T												G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.
		768	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.					.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	.	.	.	.	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S
Query Conservation																					.	.	.	.
Alig confidence																					.	.	.	.
Template Conservation
Template Sequence		L	E	Q	T	Y	V	G	I	T	E	K	K	A	I	K	R	F	Q	I	M	N	E	I	V	Y	E	K	I	M	E	H	A	G	K	N	Q	V	L	V	F	V	H	S	R	K	E	T	G	K	T	A	R	A	I	R	D	M	C	L	E
Template Known Secondary structure																														T	T			S	S								S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		685	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.
		824	.	.	.	.	.																													830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	P	D	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	T	L	G	L	F	L	R	E	G	S	A	S	T	E	V	L	R	T	E	A	E	Q	C	K	N	L	E	L	K	D	L	L	P	Y	G	F	A	I	H	H	A	G	M	T	R	V	D	R	T	L	V	E	D	L	F	A	D	K
Template Known Secondary structure		T	T	S	T	T			S	S			T	T		S	S					T	T	S			S	T							T	T	T	T						S	S	S		T												T	T
Template Predicted Secondary structure
Template SS confidence
		745	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.
		856	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A
Query Conservation
Alig confidence																												.	.	.	.										.	.	.	.
Template Conservation																												.	.	.	.										.	.	.	.
Template Sequence		H	I	Q	V	L	V	S	T	A	T	L	A	W	G	V	N	L	P	A	H	T	V	I	I	K	G	.	.	.	.	T	Q	V	Y	S	P	E	K	G	.	.	.	.	R	W	T	E	L	G	A	L	D	I	L	Q	M	L	G	R	A
Template Known Secondary structure																S				B	S							.	.	.	.						T	T	T	T	.	.	.	.															T	T	B
Template Predicted Secondary structure																												.	.	.	.										.	.	.	.
Template SS confidence
		805	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830					.	.	.	.	.	.	.	.	.					840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.
		916	.	.	.				920	.	.	.	.	.	.	.	.	.	930	.				.	.	.	.	.	.	.	.	940	.	.			.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.
Predicted Secondary structure						.	.	.													.	.	.												.	.																				.	.	.	.	.	.
Query SS confidence						.	.	.													.	.	.												.	.																				.	.	.	.	.	.
Query Sequence		G	R	T	G	.	.	.	P	G	K	C	Y	R	L	Y	T	E	R	A	.	.	.	Y	R	D	E	M	L	T	T	N	V	P	.	.	E	I	Q	R	T	N	L	A	S	T	V	L	S	L	K	A	M	G	I	.	.	.	.	.	.
Query Conservation						.	.	.													.	.	.												.	.																				.	.	.	.	.	.
Alig confidence						.	.	.													.	.	.				.								.	.																				.	.	.	.	.	.
Template Conservation																											.
Template Sequence		G	R	P	Q	Y	D	T	K	G	E	G	I	L	I	T	S	H	G	E	L	Q	Y	Y	L	S	.	L	L	N	Q	Q	L	P	I	E	S	Q	M	V	S	K	L	P	D	M	L	N	A	E	I	V	L	G	N	V	Q	N	A	K	D
Template Known Secondary structure		S		T	T	T		S										S	T	T							.		T	T	T		S						T	T	T	T												T	S			B
Template Predicted Secondary structure																											.
Template SS confidence
		857	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.		.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.
																											962	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.				.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	L	L	S	F	D	F	M	D	A	P	P	M	E	T	L	I	T	A	M	E	Q	L	Y	T	L	G	A	L	.	.	.	D	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation
Template Sequence		A	V	N	W	L	G	Y	A	Y	L	Y	I	R	M	L	R	S	P	T	L	Y	G	I	S	H	D	D	L	K	G	D	P	L	L	D	Q	R	R	L	D	L	V	H	T	A	A	L	M	L	D	K	N	N	L	V	K	Y	D	K	K
Template Known Secondary structure									S										T	T	T	T	T										T	T																			T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		916	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.
		994	.	.	.			.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.		.	.	1030	.	.	.	.	.	.	.		.	.	1040	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.																															.											.
Query SS confidence						.	.																															.											.
Query Sequence		E	G	L	L	.	.	T	R	L	G	R	R	M	A	E	F	P	L	E	P	M	L	C	K	M	L	I	M	S	V	H	L	G	C	S	E	.	E	M	L	T	I	V	S	M	L	S	.	V	Q	N	V	F	Y	R	P	K	D	K	Q
Query Conservation						.	.																															.											.
Alig confidence						.	.																															.											.
Template Conservation
Template Sequence		T	G	N	F	Q	V	T	E	L	G	R	I	A	S	H	Y	Y	I	T	N	D	T	V	Q	T	Y	N	Q	L	L	K	P	T	L	S	E	I	E	L	F	R	V	F	S	L	S	S	E	F	K	N	I	T	V	R	E	E	E	K	L
Template Known Secondary structure		T		B													T	T															T	T												T		G	G	G	T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		976	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.
		1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.								.	.	.	.	1070	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.
Query Sequence		A	L	A	D	Q	K	K	A	K	F	H	Q	T	E	G	D	.	.	.	.	.	.	.	H	L	T	L	L	A	V	Y
Query Conservation																		.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	Q	K	L	L	E	R	V	P	I	P	V	K	E	S	I	E	E	P	S	A	K	I	N	V	L	L	Q	A	F
Template Known Secondary structure										S	S	S				S			S	S
Template Predicted Secondary structure
Template SS confidence
		1036	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.