Job Description A2A4P0 Confidence 97.90% Date Wed Jul 10 14:06:11 BST 2013 Rank 162 Aligned Residues 115 % Identity 18% Template c4ernA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:tfiih basal transcription factor complex helicase xpb PDBTitle: crystal structure of the c-terminal domain of human xpb/ercc-32 excision repair protein at 1.80 a Resolution 1.80 Å

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		783	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S
Query Conservation
Alig confidence																.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	C	Q	F	L	I	K	F	H	E	R	R	N	.	D	K	I	I	V	F	A	D	N	V	F	A	L	K	E	Y	A	I	R	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	Y	I	Y	G	P	T	S	Q
Template Known Secondary structure													T	T	T	.								S												T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S
Template Predicted Secondary structure																.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		542	.	.	.	.	.	.	.	550	.	.	.	.	.		.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.															.	.	.	580	.	.	.	.	.	.
		843	.	.	.	.	.	.	850	.	.		.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		E	M	Q	T	R	I	F	D	P	A	.	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T
Query Conservation												.
Alig confidence												.																													.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.
Template Sequence		G	E	R	M	Q	I	L	Q	N	F	K	H	N	P	K	I	N	T	I	F	I	S	K	V	G	D	T	S	F	D	L	P	E	A	N	V	L	I	Q	.	.	.	.	.	.	.	.	I	S	S	H	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T	T								G	G	G	T	T	T	S					B	S					.	.	.	.	.	.	.	.	S				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.
Template SS confidence
		587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.									.	.	.	.
		902	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.									.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.
Query Sequence		P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	P	G	K	.	.	.	.	.	.	.	.	C	Y	R	L	Y	T	E
Query Conservation																							.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	S	R	R	Q	E	A	Q	R	L	G	R	V	L	R	A	K	K	G	M	V	A	E	E	Y	N	A	F	F	Y	S	L	V	S	Q
Template Known Secondary structure		S	S													B				T	T		S	S	S	S		S									T
Template Predicted Secondary structure
Template SS confidence
		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D