Job Description A2A4P0 Confidence 98.99% Date Wed Jul 10 14:06:11 BST 2013 Rank 94 Aligned Residues 130 % Identity 18% Template c4db4A_ PDB info PDB header:rna-binding protein/dna,rna Chain: A: PDB Molecule:atp-dependent rna helicase mss116, mitochondrial; PDBTitle: mss116p dead-box helicase domain 2 bound to a chimaeric rna-dna duplex Resolution 3.60 Å

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		779	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.		800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	.	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y
Query Conservation																							.
Alig confidence																							.																									.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.
Template Sequence		N	S	I	F	A	A	V	E	H	I	K	K	Q	I	K	E	R	D	S	N	Y	K	A	I	I	F	A	P	T	V	K	F	T	S	F	L	C	S	I	L	K	N	E	F	K	K	.	.	.	.	.	.	D	L	P	I	L	E	F	H
Template Known Secondary structure																		T	T	T									S																	T	T	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																																																.	.	.	.	.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.							400	.	.	.	.	.	.	.
		838	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	K	I	T	Q	N	K	R	T	S	L	V	K	R	F	K	K	D	E	S	G	I	L	V	C	T	D	V	G	A	R	G	M	D	F	P	N	V	H	E	V	L	Q	I	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	S																S	S							T	T	S	S	S	S				T	T								S		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		898	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.		.	920	.	.	.	.	.	.	.	.	.	930	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	.	G	P	G	K	C	Y	R	L	Y	T	E	R	A	Y
Query Conservation																							.
Alig confidence		.	.	.	.																		.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	P	S	E	L	A	N	Y	I	H	R	I	G	R	T	A	R	S	G	K	E	G	S	S	V	L	F	I	C	K	D	E	L
Template Known Secondary structure		.	.	.	.		S	S	T								T	T	S	S	S	S	S											G	G	G	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D