Job Description A2A4P0 Confidence 96.07% Date Wed Jul 10 14:06:11 BST 2013 Rank 246 Aligned Residues 144 % Identity 21% Template c4b4tL_ PDB info PDB header:hydrolase Chain: L: PDB Molecule:26s protease subunit rpt4; PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome Resolution 7.40 Å

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		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	A	F	G	G	N	K	A	S	Y	G	K	K	T	Q	M	S	I	L	E	Q	R	E	S	L	P	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T
Query Conservation
Alig confidence																																																										.	.	.	.
Template Conservation																																																										.	.	.	.
Template Sequence		E	Q	G	E	I	T	F	D	G	I	G	G	L	T	E	Q	I	R	E	L	R	E	V	I	E	L	P	L	K	N	P	E	I	F	Q	R	V	G	I	K	P	P	K	G	V	L	L	Y	G	P	P	G	T	G	K	T	.	.	.	.
Template Known Secondary structure			S		S	S		S	G	G	G		S																																					S		T	T	S	S			.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.														.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.														.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	A	K	A	V	A	A	T	I	G	A	N	F	.	.	.	.	.	I	F	S	P	A	S	G	I	V	D	K	Y	I	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T				.	.	.	.	.					G	G	G	T			S	S	S	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.														.	.	.
Template SS confidence
																											230	.	.	.	.	.	.	.	.	.	240	.	.	.						.	.	.	.	.	.	250	.	.	.	.	.	.
		684	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.										.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Query Sequence		Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	.	.	.	.	.	.	.	.	.	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	.	.	.	.	.
Query Conservation																																.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Alig confidence		.																														.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation		.
Template Sequence		.	G	E	S	A	R	I	I	R	E	M	F	A	Y	A	K	E	H	E	P	C	I	I	F	M	D	E	V	D	A	I	G	G	R	R	F	S	E	G	T	S	A	D	R	E	I	Q	R	T	L	M	E	L	L	T	Q	M	D	G	F
Template Known Secondary structure		.	S																S		S										S	S	S				S	S	S			S	S	T	T															S	S
Template Predicted Secondary structure		.
Template SS confidence
			257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	N	L	G	Q	T	K	I	I	M	A	T	N	R	P	D
Template Known Secondary structure		S		T	T	S	S							S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D