Job Description A2A4P0 Confidence 95.30% Date Wed Jul 10 14:06:11 BST 2013 Rank 288 Aligned Residues 104 % Identity 24% Template c4b4tJ_ PDB info PDB header:hydrolase Chain: J: PDB Molecule:26s protease regulatory subunit 8 homolog; PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome Resolution 7.40 Å

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		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	Q	P	K	G	V	I	L	Y	G	P	P	G	T	G	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	A	R	A	V	A	H	H	T	D	C	K
Template Known Secondary structure												S		S	S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.																														.	.	.	200	.	.	.	.	.	.	.	.	.
		662	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.
Query Sequence		L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	.	.	.	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.															.	.	.	.																														.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.															.	.	.	.
Template Sequence		.	.	.	.	.	F	I	R	V	S	G	A	E	L	V	Q	K	Y	I	.	.	.	.	G	E	G	S	R	M	V	R	E	L	F	V	M	A	R	E	H	A	P	S	I	I	F	M	D	E	I	D	S	I	G	S	T	R	V	E	G
Template Known Secondary structure		.	.	.	.	.						G	G	G	G	S		S	S	T	.	.	.	.	T																T		S							S	S	S			T	T	S		S		S
Template Predicted Secondary structure		.	.	.	.	.															.	.	.	.
Template SS confidence
							210	.	.	.	.	.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
						714	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		S	G	G	G	D	S	E	V	Q	R	T	M	L	E	L	L	N	Q	L	D	G	F	E	T	S	K	N	I	K	I	I	M	A	T
Template Known Secondary structure		S	S	G	G	G	G															T	T	T
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D