Job Description A2A4P0 Confidence 97.64% Date Wed Jul 10 14:06:11 BST 2013 Rank 169 Aligned Residues 124 % Identity 24% Template c4b3gA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:dna-binding protein smubp-2; PDBTitle: crystal structure of ighmbp2 helicase in complex with rna Resolution 2.85 Å

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		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence		S	Q	K	E	A	V	L	F	A	L	S	Q	K	E	L	A	I	I	H	G	P	P	G	T	G	K	T	T	T	V	V	E	I	I	L	Q	A	V	.	K	Q	G	L	K	V	L	C	C	A	P	S	N	I	A	V	D	N	L	V	E
Template Known Secondary structure												T		S	S								T	T	S															.		T	T								S	S
Template Predicted Secondary structure																																								.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		653	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.
Template Sequence		R	L	A	L	C	K	Q	R	.	.	.	.	.	.	.	.	I	L	R	L	G	H	P	A	R	L	L	E	S	I	Q	Q	H	S	L	D	A	V	L	A	R	S	D	S	A	Q	I	V	A	D	I	R	K	D	I	D	Q	V	F	V
Template Known Secondary structure						T	T			.	.	.	.	.	.	.	.					S		S	T	T	S		G	G	G	G	G	G	B							S	S	S							T						T	S	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.									.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
																											678	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation																																																													.
Template Sequence		K	N	N	E	I	K	L	L	R	K	E	L	K	E	R	E	E	A	A	M	L	E	S	L	T	S	A	N	V	V	L	A	T	N	T	G	A	S	A	D	G	P	L	K	L	L	P	E	S	Y	F	D	V	V	V	I	D	E	C	.
Template Known Secondary structure						S																					T		S						G	G	G	G		T	T	S	G	G	G	G	S		T	T			S					T	T	G	.
Template Predicted Secondary structure																																																													.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		713	.	.	.	.	.	.	720	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	T	I	H	T	D	V	L	F	G	L	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	A	L	E	A	S	C	W	I	P	L	L	K
Template Known Secondary structure		G	G	S										T	T
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D