Job Description A2A4P0 Confidence 100.00% Date Wed Jul 10 14:06:11 BST 2013 Rank 11 Aligned Residues 537 % Identity 18% Template c3rc8A_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial; PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment Resolution 2.90 Å Model Dimensions (Å) X:80.376 Y:92.488 Z:72.694

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		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	A	M	M	Q	S	A	L	A	K	E	R	R	E	L	K	Q	A	Q	R	E	A	E	M	D	S	I	P	M	G	L	N	K	H	W	V	D	P	L	P	D	A	E	G	R	Q	I	A	A	N	M	R	G	I	G	M	M	P	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	F	Y	K	R	K	E	I	Q	K	L	G	A	D	Y	G	L	D	A	R	L	F	H	Q	A	F	I	S	F	R	N	Y	I	M	Q	S	H	S	L	D	V	D	I	H	I	V	L	N	D	I	C	F	G	A	A	H	A	D	D
Template Known Secondary structure																	T	T																					S	S															S	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	P	E	W	K	K	H	A	F	G	G	N	K	A	S	Y	G	K	K	T	Q	M	S	I	L	E	Q	R	E	S	L	P	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G
Query Conservation
Alig confidence																																							.	.	.	.	.
Template Conservation																																							.	.	.	.	.
Template Sequence		L	F	P	F	F	L	R	H	A	K	Q	I	F	P	V	L	D	C	K	D	D	L	R	K	I	S	D	L	R	I	P	P	N	W	Y	P	D	.	.	.	.	.	A	R	A	M	Q	R	K	I	I	F	H	S	G	P	T	N	S	G
Template Known Secondary structure		G													G	G	G	G									T	B				G	G	G	G				.	.	.	.	.			T	S										S	S	S	S	S
Template Predicted Secondary structure																																							.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.						.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S
Query Conservation
Alig confidence															.	.	.	.	.																				.
Template Conservation															.	.	.	.	.																				.
Template Sequence		K	T	Y	H	A	I	Q	K	Y	F	S	A	K	.	.	.	.	.	S	G	V	Y	C	G	P	L	K	L	L	A	H	E	I	F	E	K	S	.	N	A	A	G	V	P	C	D	L	V	T	G	E	E	R	V	T	V	Q	P	N	G
Template Known Secondary structure		T	T										S	S	.	.	.	.	.	S						S	S												.			T	T								S	S						S	S	S	S
Template Predicted Secondary structure															.	.	.	.	.																				.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		678	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.						.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.
Predicted Secondary structure																																					.	.	.	.	.
Query SS confidence																																					.	.	.	.	.
Query Sequence		P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	.	.	.	.	.	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R
Query Conservation																																					.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																.	.	.	.	.															.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.																																			.	.	.	.	.
Template Sequence		K	Q	A	S	H	V	S	C	T	V	E	M	C	.	.	.	.	.	.	.	S	V	T	T	P	Y	E	V	A	V	I	D	E	I	Q	M	I	R	D	P	A	R	G	W	A	W	T	R	A	L	L	G	L	C	.	.	.	.	.	A
Template Known Secondary structure					S						G	G	G		.	.	.	.	.	.	.		S	S	S										G	G	G	G	G		T	T	T													.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.																																			.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.								280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.						.
		733	.	.	.	.	.	.	740	.	.	.	.	.		.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		Q	D	M	K	L	I	V	T	S	A	T	L	D	.	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I
Query Conservation															.
Alig confidence															.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	V	H	L	C	G	E	P	A	A	I	D	L	V	M	E	L	M	Y	T	T	G	E	E	V	E	V	R	D	Y	K	R	L	T	P	I	S	V	L	D	H	A	L	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										G	G	G												T											S	S						S	S				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		792	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P
Query Conservation
Alig confidence		.																													.	.	.	.	.	.	.	.	.
Template Conservation		.																													.	.	.	.	.	.	.	.	.
Template Sequence		.	L	D	N	L	R	P	G	D	C	I	V	C	F	S	K	N	D	I	Y	S	V	S	R	Q	I	E	I	R	.	.	.	.	.	.	.	.	.	G	L	E	S	A	V	I	Y	G	S	L	P	P	G	T	K	L	A	Q	A	K	K
Template Known Secondary structure		.	S	T	T			T	T						S	S														T	.	.	.	.	.	.	.	.	.	T								T	T	S
Template Predicted Secondary structure		.																													.	.	.	.	.	.	.	.	.
Template SS confidence
			361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.										.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		852			.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		A	.	.	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K
Query Conservation			.	.
Alig confidence			.	.																						.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	N	D	P	N	D	P	C	K	I	L	V	A	T	D	A	I	G	M	G	L	N	L	S	.	I	R	R	I	I	F	Y	S	L	I	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	T	T	S	Q	A	L
Template Known Secondary structure					T	T		S								G	G	G	G	S	S					.	B	S					S		S	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B
Template Predicted Secondary structure																										.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.																.	.	.	450	.	.	.	.
		910	.	.	.	.	.	.	.	.	.					920	.	.	.	.	.	.	.	.	.	930		.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950			.	.	.	.	.	.	.	.	.	960	.	.
Predicted Secondary structure												.	.	.	.												.																					.	.
Query SS confidence												.	.	.	.												.																					.	.
Query Sequence		Q	R	A	G	R	A	G	R	T	G	.	.	.	.	P	G	K	C	Y	R	L	Y	T	E	R	.	A	Y	R	D	E	M	L	T	T	N	V	P	E	I	Q	R	T	N	L	A	.	.	S	T	V	L	S	L	K	A	M	G	I	N
Query Conservation												.	.	.	.												.																					.	.
Alig confidence												.	.	.	.												.																					.	.
Template Conservation
Template Sequence		Q	I	A	G	R	A	G	R	F	S	S	R	F	K	E	G	E	V	T	T	M	N	H	E	D	L	S	L	L	K	E	I	L	K	R	P	V	D	P	I	R	A	A	G	L	H	P	T	A	E	Q	I	E	M	F	A	Y	H	L	P
Template Known Secondary structure					T	T	B				T	T	T			S						S	S												T	S																									T
Template Predicted Secondary structure
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		963							.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.		.	.	.	.	.	.	.				1010	.	.
Predicted Secondary structure			.	.	.	.	.	.																																								.								.	.	.
Query SS confidence			.	.	.	.	.	.																																								.								.	.	.
Query Sequence		D	.	.	.	.	.	.	L	L	S	F	D	F	M	D	A	P	P	M	E	T	L	I	T	A	M	E	Q	L	Y	T	L	G	A	L	D	D	E	G	L	L	T	R	L	G	R	.	R	M	A	E	F	P	L	.	.	.	E	P	M
Query Conservation			.	.	.	.	.	.																																								.								.	.	.
Alig confidence			.	.	.	.	.	.																																								.								.	.	.
Template Conservation
Template Sequence		D	A	T	L	S	N	L	I	D	I	F	V	D	F	S	Q	V	D	G	Q	Y	F	V	C	N	M	D	D	F	K	F	S	A	E	L	I	Q	H	I	P	L	S	L	R	V	R	Y	V	F	C	T	A	P	I	N	K	K	Q	P	F
Template Known Secondary structure		T	S														B			T	T																T	T	T	S													S				T	T
Template Predicted Secondary structure
Template SS confidence
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.
		1013	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	K	M	L	I	M	S	V	H	L	G	C	S	E	E	M	L	T	I	V	S	M	L	S	V	Q	N	V	F	Y	R	P	K	D	K	Q	A	L	A	D	Q	K	K	A	K	F	H	Q	T	E	G	D	H	L	T	L	L	A	V
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.
Template Sequence		V	C	S	S	L	L	Q	F	A	R	Q	Y	S	R	N	E	P	L	T	F	A	W	L	R	R	Y	I	K	W	P	L	L	P	P	K	N	I	K	D	L	M	D	L	.	.	.	.	.	.	.	.	E	A	V	H	D	V	L	D	L
Template Known Secondary structure															T	T												T	T	S	S					S	S								.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.
Template SS confidence
		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.									.	630	.	.	.	.	.	.	.
		1073	.	.	.	.	.	.	1080	.	.																	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	N	S	W	K	N	N	K	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	W	C	Y	E	N	F	I	Q	A	R	S	L	R	R	A	Q	D	I	R	K	Q	M
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		Y	L	.	W	L	S	Y	R	F	M	D	M	F	P	D	A	S	L	I	R	D	L	Q	K	E	L	D	G	I	I	Q	D	G	V	H	N	I	T	K	L	I	K	M	S	E	T	H	K	L	L
Template Known Secondary structure				.							T	T	T	S																							T										T	T	S
Template Predicted Secondary structure				.
Template SS confidence
		638	.		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.