Job Description A2A4P0 Confidence 98.85% Date Wed Jul 10 14:06:11 BST 2013 Rank 106 Aligned Residues 310 % Identity 19% Template c3mwyW_ PDB info PDB header:hydrolase Chain: W: PDB Molecule:chromo domain-containing protein 1; PDBTitle: crystal structure of the chromodomain-atpase portion of the yeast chd12 chromatin remodeler Resolution 3.70 Å

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		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.			.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	.	.	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R
Query Conservation																																						.	.
Alig confidence																																						.	.												.	.
Template Conservation																																																			.	.
Template Sequence		N	W	M	A	F	L	W	S	K	G	D	N	G	I	L	A	D	E	M	G	L	G	K	T	V	Q	T	V	A	F	I	S	W	L	I	F	A	R	R	Q	N	G	P	H	I	I	V	V	P	.	.	L	S	T	M	P	A	W	L	D
Template Known Secondary structure									T	T	T									T	T	S	S	T	T															S			S								.	.	T	T	T
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.			.	.	.	.	.	.	440	.	.
		654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.												.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	.	.	.	.	.	.	.	.	.	.	.	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation																																																												.
Template Sequence		T	F	E	K	W	A	P	D	L	N	C	I	C	Y	M	G	N	Q	K	S	R	D	T	I	R	E	Y	E	F	Y	T	N	P	K	T	M	K	F	N	V	L	L	T	T	Y	E	Y	I	L	K	D	R	A	E	L	G	S	I	.	K
Template Known Secondary structure							S	T	T									S	S											S		S								S						T	T					T						T	S	.
Template Predicted Secondary structure																																																												.
Template SS confidence
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500		.
		703	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.
Query Sequence		Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	D	A	V	K	F	S	Q	Y	F	Y	.	.	.	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.
Template Sequence		W	Q	F	M	A	V	D	E	A	H	R	L	K	N	A	E	S	S	L	Y	E	S	L	N	S	F	.	.	.	.	K	V	A	N	R	M	L	I	T	G	T	P	L	Q	N	N	I	K	E	L	A	A	L	V	N	F	L	M	P	G
Template Known Secondary structure								T	T	G	G	G	G			S	S	S							T	T	S	.	.	.	.										S				S	S		S												S
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.					.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
																														755	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation
Template Sequence		R	F	N	Q	D	E	E	Q	E	E	Y	I	H	D	L	H	R	R	I	Q	P	F	I	L	R	R	L	K	K	D	V	E	K	S	L	P	S	K	T	E	R	I	L	R	V	E	L	S	D	V	Q	T	E	Y	Y	K	N	I	L	T
Template Known Secondary structure						T	T												T	T	G	G	G						G	G	G	G	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		563	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
																																																					785	.	.	.	.	790	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	T	V	M	Q	I	H	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	N	Y	S	F	S	L	L	N	I	M	N	E	L	K	K	A	S	N	H	P	Y	L	F	D	N	A	E	E	R	V	L	Q	K	F	M	T	R	E	N	V	L	R	G	L	I	M	S	S	G	K	M	V	L	L	D	Q	L	L	T
Template Known Secondary structure							T															G	G	G	S	S	S												S										T
Template Predicted Secondary structure
Template SS confidence
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
		794			.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.																																																							.	.	.
Query SS confidence			.	.																																																							.	.	.
Query Sequence		T	.	.	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	.	.	.
Query Conservation			.	.																																																							.	.	.
Alig confidence			.	.																											.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.
Template Sequence		R	L	K	K	D	G	H	R	V	L	I	F	S	Q	M	V	R	M	L	D	I	L	G	D	Y	L	S	I	K	.	.	.	.	.	.	.	.	.	G	I	N	F	Q	R	L	D	G	T	V	P	S	A	Q	R	R	I	S	I	D	H
Template Known Secondary structure				T	T	T	T								S																.	.	.	.	.	.	.	.	.	T							S	T	T	S											T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.
Template SS confidence
		706	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.										.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.
		849	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Template Sequence		F	N	S	P	D	S	N	D	F	V	F	L	L	S	T	R	A	G	G	L	G	I	N	L	M	T	A	D	T	V	V	.	.	.	.	.	.	.	.	I	F	D	S	D	W	N	.	.	.	.	.	.	.	P	Q	A	D	L	Q	A
Template Known Secondary structure		T	S	S	T	T		S												T	T	T				T	T						.	.	.	.	.	.	.	.		S	S			S		.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Template SS confidence
		757	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.									.	.	790	.	.	.	.								.	.	.	.	.	800	.
		909	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	R	A	G	R	A	G	R	T	G	P	G	K	C	Y	R	L	Y	T	E	R	A	Y	R	D	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	A	R	A	H	R	I	G	Q	K	N	H	V	M	V	Y	R	L	V	S	K	D	T	V	E	E	E	V
Template Known Secondary structure			T	T	T	S		S	S			S										T	T	S
Template Predicted Secondary structure
Template SS confidence
		802	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.