Job Description A2A4P0 Confidence 100.00% Date Wed Jul 10 14:06:11 BST 2013 Rank 1 Aligned Residues 716 % Identity 47% Template c3kx2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna PDBTitle: crystal structure of prp43p in complex with adp Resolution 2.20 Å Model Dimensions (Å) X:90.397 Y:76.208 Z:68.396

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		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	E	L	K	Q	A	Q	R	E	A	E	M	D	S	I	P	M	G	L	N	K	H	W	V	D	P	L	P	D	A	E	G	R	Q	I	A	A	N	M	R	G	I	G	M	M	P	N	D	I	P	E	W	K	K	H	A	F	G	G
Query Conservation
Alig confidence																																											.
Template Conservation																																											.
Template Sequence		V	E	T	S	I	P	E	Q	A	A	E	I	A	E	E	L	S	K	Q	H	P	L	P	S	E	E	P	L	V	H	H	D	A	G	E	F	K	G	L	Q	R	.	H	H	T	S	A	E	E	A	Q	K	L	E	D	G	K	I	N	P
Template Known Secondary structure		T	T	T															T	T	S													S	S	T	T	T	T			T	.	T													S	S	B		T
Template Predicted Secondary structure																																											.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	A	S	Y	G	K	K	T	Q	M	S	I	L	E	Q	R	E	S	L	P	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T	G	R	E	F	T	P	K	Y	V	D	I	L	K	I	R	R	E	L	P	V	H	A	Q	R	D	E	F	L	K	L	Y	Q	N	N	Q	I	M	V	F	V	G	E	T	G	S	G	K	T	T	Q	I	P	Q	F	V	L	F	D
Template Known Secondary structure		T	S	S	S	B													T	T	S	G	G	G	G	G												S								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		630	.			.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		G	Y	.	.	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		E	M	P	H	L	E	N	T	Q	V	A	C	T	Q	P	R	R	V	A	A	M	S	V	A	Q	R	V	A	E	E	M	D	V	K	L	G	E	E	V	G	Y	S	I	R	F	E	N	K	T	S	N	K	T	I	L	K	Y	M	T	D
Template Known Secondary structure				G	G	G	G	T								S																T	T			B	T	T	T						T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		688	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	D	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	M	L	L	R	E	A	M	E	D	H	D	L	S	R	Y	S	C	I	I	L	D	E	A	H	E	R	T	L	A	T	D	I	L	M	G	L	L	K	Q	V	V	K	R	R	P	D	L	K	I	I	I	M	S	A	T	L	D	A	E
Template Known Secondary structure												T	T		T	T									G	G	G																				T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		748	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	F	Q	R	Y	F	N	D	A	P	L	L	A	V	P	G	R	T	Y	P	V	E	L	Y	Y	T	P	E	F	Q	R	D	Y	L	D	S	A	I	R	T	V	L	Q	I	H	A	T	E	E	A	G	D	I	L	L	F	L	T	G	E
Template Known Secondary structure							T	T	S																			S	S			S																	S		S								S	S
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		808	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.			.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.						.	.	.	860
Predicted Secondary structure																						.	.																														.	.	.	.	.
Query SS confidence																						.	.																														.	.	.	.	.
Query Sequence		E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	.	.	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	.	.	.	.	.	R	K	V	V
Query Conservation																						.	.																														.	.	.	.	.
Alig confidence																						.	.																														.	.	.	.	.
Template Conservation
Template Sequence		D	E	I	E	D	A	V	R	K	I	S	L	E	G	D	Q	L	V	R	E	E	G	C	G	P	L	S	V	Y	P	L	Y	G	S	L	P	P	H	Q	Q	Q	R	I	F	E	P	A	P	E	S	H	N	G	R	P	G	R	K	V	V
Template Known Secondary structure																																		T	T							G	G	G	G	S						S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		861	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	T	N	I	A	E	T	S	L	T	I	D	G	I	V	Y	V	V	D	P	G	F	S	K	Q	K	V	Y	N	P	R	I	R	V	E	S	L	L	V	S	P	I	S	K	A	S	A	Q	Q	R	A	G	R	A	G	R	T	R	P
Template Known Secondary structure					T					S				T	T																	T	T	T	T																				G	G	G	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
		921	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	C	Y	R	L	Y	T	E	R	A	Y	R	D	E	M	L	T	T	N	V	P	E	I	Q	R	T	N	L	A	S	T	V	L	S	L	K	A	M	G	I	N	D	L	L	S	F	D	F	M	D	A	P	P	M	E	T	L	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	C	F	R	L	Y	T	E	E	A	F	Q	K	E	L	I	E	Q	S	Y	P	E	I	L	R	S	N	L	S	S	T	V	L	E	L	K	K	L	G	I	D	D	L	V	H	F	D	F	M	D	P	P	A	P	E	T	M	M	R
Template Known Secondary structure							S	S								T	S		S	S				G	G	G	G													T	T				S	T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
		981	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	E	Q	L	Y	T	L	G	A	L	D	D	E	G	L	L	T	R	L	G	R	R	M	A	E	F	P	L	E	P	M	L	C	K	M	L	I	M	S	V	H	L	G	C	S	E	E	M	L	T	I	V	S	M	L	S	V	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	E	E	L	N	Y	L	A	C	L	D	D	E	G	N	L	T	P	L	G	R	L	A	S	Q	F	P	L	D	P	M	L	A	V	M	L	I	G	S	F	E	F	Q	C	S	Q	E	I	L	T	I	V	A	M	L	S	V	P	N
Template Known Secondary structure									T	T	S	B		T	T	S		B								T	T	S	S	S											G	G	G	G	T													T	S
Template Predicted Secondary structure
Template SS confidence
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
		1041	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.					.	.	.	.	.	.	1090	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		V	F	Y	R	P	K	D	K	Q	A	L	A	D	Q	K	K	A	K	F	H	Q	T	E	G	D	H	L	T	L	L	A	V	Y	N	S	W	K	N	N	K	F	S	N	.	.	.	.	P	W	C	Y	E	N	F	I	Q	A	R	S	L
Query Conservation																																													.	.	.	.
Alig confidence																																													.	.	.	.
Template Conservation
Template Sequence		V	F	I	R	P	T	K	D	K	K	R	A	D	D	A	K	N	I	F	A	H	P	D	G	D	H	I	T	L	L	N	V	Y	H	A	F	K	S	D	E	A	Y	E	Y	G	I	H	K	W	C	R	D	H	Y	L	N	Y	R	S	L
Template Known Secondary structure			B				T	T											T	T			T	T	B													T	S															T	T	B
Template Predicted Secondary structure
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
		1097	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.					.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.		.	.	1150	.
Predicted Secondary structure																												.	.	.	.																										.
Query SS confidence																												.	.	.	.																										.
Query Sequence		R	R	A	Q	D	I	R	K	Q	M	L	G	I	M	D	R	H	K	L	D	V	V	S	C	G	K	.	.	.	.	S	T	V	R	V	Q	K	A	I	C	S	G	F	F	R	N	A	A	K	K	D	P	Q	E	G	.	Y	R	T	L
Query Conservation																												.	.	.	.																										.
Alig confidence																												.	.	.	.																										.
Template Conservation
Template Sequence		S	A	A	D	N	I	R	S	Q	L	E	R	L	M	N	R	Y	N	L	E	L	N	T	T	D	Y	E	S	P	K	Y	F	D	N	I	R	K	A	L	A	S	G	F	F	M	Q	V	A	K	K	R	S	G	A	K	G	Y	I	T	V
Template Known Secondary structure																		T	T								T	T	S	T	T														T	T	S						T	T	T	S	S				T
Template Predicted Secondary structure
Template SS confidence
		614	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
		1152	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	Q	Q	V	V	Y	I	H	P	S	S	A	L	F	N	R	Q	P	E	W	V	V	Y	H	E	L	V	L	T	T	K	E	Y	M	R	E	V	T	T	I	D	P	R	W	L	V	E	F	A	P	A	F	F	K	V	S	D	P	T
Query Conservation
Alig confidence																			.																																					.	.	.
Template Conservation																			.																																					.	.	.
Template Sequence		K	D	N	Q	D	V	L	I	H	P	S	T	V	L	G	H	D	.	A	E	W	V	I	Y	N	E	F	V	L	T	S	K	N	Y	I	R	T	V	T	S	V	R	P	E	W	L	I	E	I	A	P	A	Y	Y	.	.	.	D	L	S
Template Known Secondary structure		T	T								T	T	S				T	T	.		S										S	S	S																			T	T	T	S	.	.	.		G	G
Template Predicted Secondary structure																			.																																					.	.	.
Template SS confidence
		674	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690		.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.				.	.	.
		1212	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	S	K	Q	K	K	Q	Q	R	L	E	P	L	Y	N	R	Y	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	F	Q	K	G	D	V	K	L	S	L	E	R	I	K	E	K	V	D
Template Known Secondary structure		G	S		S		S	S
Template Predicted Secondary structure
Template SS confidence
		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.