Job Description A2A4P0 Confidence 99.75% Date Wed Jul 10 14:06:11 BST 2013 Rank 43 Aligned Residues 315 % Identity 20% Template c3i5yA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase mss116; PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp Resolution 2.49 Å

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		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.			.	.	.	610	.	.	.	.	.	.	.	.	.	620	.					.	.	.	.	.	.	.	.	630	.	.	.	.	.			.	.	.	.	640	.	.	.
Predicted Secondary structure																	.	.																.	.	.	.															.	.
Query SS confidence																	.	.																.	.	.	.															.	.
Query Sequence		Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	.	.	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	.	.	.	.	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	.	.	K	I	G	C	T	Q	P	R
Query Conservation																	.	.																.	.	.	.															.	.
Alig confidence																	.	.																.	.	.	.															.	.
Template Conservation
Template Sequence		T	P	V	Q	Q	K	T	I	K	P	I	L	S	S	E	D	H	D	V	I	A	R	A	K	T	G	T	G	K	T	F	A	F	L	I	P	I	F	Q	H	L	I	N	T	K	F	D	S	Q	Y	M	V	K	A	V	I	V	A	P	T
Template Known Secondary structure															S	S										T	T	S																	T	T	T	S	S	T	T	S								S	S
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.											.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	.	.	.	.	.	.	.	.	.	.	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E
Query Conservation																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	L	A	L	Q	I	E	A	E	V	K	K	I	H	D	M	N	Y	G	L	K	K	Y	A	C	V	S	L	V	G	G	T	D	F	R	A	A	M	N	K	M	N	K	L	R	P	N	I	V	I	A	T	P	G	R	L	I	D	V
Template Known Secondary structure																		T		G	G	G	G	G	S							T	T	S															S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		694	.	.	.	.	.			700	.	.	.	.	.	.	.	.	.	710	.	.							.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.
Predicted Secondary structure								.	.														.	.	.	.	.	.
Query SS confidence								.	.														.	.	.	.	.	.
Query Sequence		C	L	I	D	P	D	.	.	L	T	Q	Y	A	I	I	M	L	D	E	A	H	.	.	.	.	.	.	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	D
Query Conservation								.	.														.	.	.	.	.	.
Alig confidence								.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	K	Y	S	N	K	F	F	R	F	V	D	Y	K	V	L	D	E	A	D	R	L	L	E	I	G	F	R	D	D	L	E	T	I	S	G	I	L	N	E	K	N	S	K	S	A	D	N	I	K	T	L	L	F	S	A	T	L	D
Template Known Secondary structure											T	T								T					T	S	T	T	T																S	S		T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
				746	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.											.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.
Predicted Secondary structure		.	.																	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	.	.	.	.	.	.	.	.	.	.	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L
Query Conservation		.	.																	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	K	V	Q	K	L	A	N	N	I	M	N	K	K	E	C	L	F	L	D	T	V	D	K	N	E	P	E	A	H	E	R	I	D	Q	S	V	V	I	S	E	K	F	A	N	S	I	F	A	A	V	E	H	I	K	K	Q	I	K	E
Template Known Secondary structure		T						T	G	G	G			S	S							S	S		S	S	S		S	S		T	T									S	S	S	T
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		794	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P
Query Conservation
Alig confidence																																.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.
Template Sequence		R	D	S	N	Y	K	A	I	I	F	A	P	T	V	K	F	T	S	F	L	C	S	I	L	K	N	E	F	K	K	.	.	.	.	.	.	D	L	P	I	L	E	F	H	G	K	I	T	Q	N	K	R	T	S	L	V	K	R	F	K
Template Known Secondary structure		T	T	T									S	S																T	T	.	.	.	.	.	.	T	S						S	T	T	S
Template Predicted Secondary structure																																.	.	.	.	.	.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.							400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		854	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	E	S	G	I	L	V	C	T	D	V	G	A	R	G	M	D	F	P	N	V	H	E	V	L	Q	I	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	E	L	A	N	Y	I	H	R	I	G
Template Known Secondary structure				S	S							G	G	G	T	S	S				T	T								S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	T								T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.																			.	.	.	.	.	.	460	.	.	.	.	.
		914	.	.	.	.		.	920	.	.	.	.	.	.	.	.	.	930
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		R	A	G	R	T	.	G	P	G	K	C	Y	R	L	Y	T	E	R
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		R	T	A	R	S	G	K	E	G	S	S	V	L	F	I	C	K	D
Template Known Secondary structure		T	S	S		T	T											G	G
Template Predicted Secondary structure
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D