Job Description A2A4P0 Confidence 99.53% Date Wed Jul 10 14:06:11 BST 2013 Rank 59 Aligned Residues 291 % Identity 18% Template c3h1tA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:type i site-specific restriction-modification PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016 Resolution 2.30 Å

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		593	.	.	.	.	.	.	600	.	.	.	.	.						.	.	.	.	610	.	.	.	.	.	.	.	.	.				620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.						.	.	.	.
Predicted Secondary structure															.	.	.	.	.															.	.	.																	.	.	.	.	.
Query SS confidence															.	.	.	.	.															.	.	.																	.	.	.	.	.
Query Sequence		K	L	K	E	Q	L	V	Q	A	V	H	D	N	.	.	.	.	.	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	.	.	.	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	.	.	.	.	.	K	I	G	C
Query Conservation															.	.	.	.	.															.	.	.																	.	.	.	.	.
Alig confidence															.	.	.	.	.															.	.	.																	.	.	.	.	.
Template Conservation
Template Sequence		Y	Y	Q	Q	I	A	I	N	R	A	V	Q	S	V	L	Q	G	K	K	R	S	L	I	T	X	A	T	G	T	G	K	T	V	V	A	F	Q	I	S	W	K	L	W	S	A	R	W	N	R	T	G	D	Y	R	K	P	R	I	L	F
Template Known Secondary structure																	T	T		S								T	T	S																T	T			S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																						.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																						.
Template Sequence		L	A	D	T	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	F	G	D	A	R	H	K	I	.	.	.	E	G	V	V	K	S	R	E	I	Y	F	A	I	Y	Q	S	I	P	G	L	Y	.	K	E	F	P
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T		S	S					.	.	.					S	S		S						G	G	G				G	G	.	G	G	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																						.
Template SS confidence
		241	.	.	.	.																	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280
		700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.				.	.	.	.	.	750	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	.	.	.	D	A	V	K	F	S	Q	Y	F	Y	E	A
Query Conservation																																															.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	D	F	F	D	L	I	I	I	D	E	C	H	.	.	.	.	.	.	.	.	.	.	.	.	W	R	E	I	L	E	Y	F	E	P	A	F	Q	I	G	X	T	A	T	P	L	R	E	D	N	R	D	T	Y	R	Y	F	G	N	P
Template Known Secondary structure		T	T	S		S					S				.	.	.	.	.	.	.	.	.	.	.	.								S	T	T	S							S	S		S		T	T	T							S		S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.													.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		757	.	.	760	.									.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.												.	.	.	790	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	I	F	T	I	.	.	.	.	.	.	.	.	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	.	.	.	.	.	.	.	.	.	.	.	T	V	M	Q	I	H	L	T	E	P	P
Query Conservation							.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	Y	T	Y	S	L	R	Q	G	I	D	D	G	F	L	A	P	Y	R	V	H	R	V	I	S	E	V	D	A	T	K	D	F	E	R	V	I	A	L	K	A	R	T	D	A	F	A	K	H	L	T	D	F	X	K	R	T	D	R	F
Template Known Secondary structure		S												T	S	S											T	T					S										T																	T	T
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		798	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.		.	.	850	.	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	.	I	F	D	P	A	P	P	G	S
Query Conservation																																																				.
Alig confidence																																																				.
Template Conservation
Template Sequence		A	K	T	I	V	F	C	V	D	Q	E	H	A	D	E	X	R	R	A	L	N	N	L	N	S	D	L	S	R	K	H	P	D	Y	V	A	R	V	T	S	E	E	G	K	I	G	K	G	H	L	S	R	F	Q	E	L	E	T	S	T
Template Known Secondary structure		S							S	S															T					T	T		T	T	S					S	S	T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
		857	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	I	L	T	T	S	Q	L	L	T	T	G	V	D	A	P	T	C	K	N	V	V	L	A	R	V	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	X	S	E	F	K	Q	I	V	G	R	G	T
Template Known Secondary structure								S	S	T	T	T	T	T				T	T								S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.																			.	530	.	.	.	.	.	.	.	.	.	540	.
		917	.	.	920														.	.	.	.	.	.	.	.	.	930	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	C	Y	R	L	Y	T	E	R	A	Y	R
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	R	E	D	Y	G	K	L	W	F	N	I	I	D	Y	T	G	S	A	T	Q	N	F	A	D	P	D	F	D
Template Known Secondary structure				B	G	G	G	T	B	S								S	S	S					T
Template Predicted Secondary structure
Template SS confidence
		542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D