Job Description A2A4P0 Confidence 99.51% Date Wed Jul 10 14:06:11 BST 2013 Rank 60 Aligned Residues 273 % Identity 18% Template c3fhoB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase dbp5; PDBTitle: structure of s. pombe dbp5 Resolution 2.80 Å

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		599	600	.	.	.	.	.			.	.	.	.	610	.	.	.	.	.	.	.	.	.	620			.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
Predicted Secondary structure									.	.																.	.
Query SS confidence									.	.																.	.
Query Sequence		V	Q	A	V	H	D	N	.	.	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	.	.	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V
Query Conservation									.	.																.	.
Alig confidence									.	.																.	.
Template Conservation
Template Sequence		L	P	L	L	L	S	N	P	P	R	N	M	I	G	Q	S	Q	S	G	T	G	K	T	A	A	F	A	L	T	M	L	S	R	V	D	A	S	V	P	K	P	Q	A	I	C	L	A	P	S	R	E	L	A	R	Q	I	M	D	V	V
Template Known Secondary structure								S	S										S	S	T	T	S												S		T	T			S								S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.		700	.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	.	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E
Query Conservation																																															.
Alig confidence					.	.	.	.	.	.	.	.	.																																		.
Template Conservation					.	.	.	.	.	.	.	.	.
Template Sequence		T	E	M	.	.	.	.	.	.	.	.	.	G	K	Y	T	E	V	K	T	A	F	K	I	D	A	Q	I	V	I	G	T	P	G	T	V	M	D	L	M	K	R	R	Q	L	D	A	R	D	I	K	V	F	V	L	D	E	A	D	N
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	S	T	T	S	S										S															T	T		S			T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Template SS confidence
		205	.	.										.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		714	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L	D	Q	L	G	D	Q	S	M	R	I	K	H	L	L	P	R	N	T	Q	I	V	L	F	S	A	T	F	S	E	R	V	E	K	Y	A	E	R	F	A	P	N	A	N	E	I	R	L	K	T	E	E	G	I	K	Q	L	Y	M
Template Known Secondary structure			T	T													S		T	T								S			S	T										S	T	T
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		774	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I
Query Conservation
Alig confidence																		.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	C	Q	S	E	E	H	K	Y	N	V	L	V	E	L	Y	.	.	.	.	.	G	T	I	G	Q	S	I	I	F	C	K	K	K	D	T	A	E	E	I	A	R	R	M	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A
Template Known Secondary structure				S	S	S												.	.	.	.	.									B		S	S					T							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																		.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.						.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.															.
		834	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T
Query Conservation
Alig confidence																																.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Sequence		D	G	H	T	V	A	C	L	T	A	Q	R	D	A	I	M	D	S	F	R	V	G	T	S	K	V	L	V	T	T	.	.	.	.	.	N	I	D	V	S	Q	V	N	L	V	V	N	L	D	D	P	Q	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T									T	T	G	G	G	S					S	S	S								.	.	.	.	.					T	T										T		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.	.																		.	.	.	.	.	.	.	.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.						.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		894	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	P	G	K	C	Y	R	L	Y	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	L	H	R	I	G	R	T	G	V	.	.	.	G	V	S	I	N	F	V	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	S					.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template SS confidence
															441	.	.	.	.	.	.	.	.	450	.				.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D