Job Description A2A4P0 Confidence 99.64% Date Wed Jul 10 14:06:11 BST 2013 Rank 51 Aligned Residues 330 % Identity 15% Template c3eiqD_ PDB info PDB header:hydrolase/antitumor protein Chain: D: PDB Molecule:eukaryotic initiation factor 4a-i; PDBTitle: crystal structure of pdcd4-eif4a Resolution 3.50 Å

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		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620			.	.	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		F	G	G	N	K	A	S	Y	G	K	K	T	Q	M	S	I	L	E	Q	R	E	S	L	P	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	.	.	Q	I	T	Q
Query Conservation																																																								.	.
Alig confidence																																																								.	.
Template Conservation
Template Sequence		V	D	S	F	D	D	M	N	L	S	E	S	L	L	R	G	I	Y	A	Y	G	F	E	K	P	S	A	I	Q	Q	R	A	I	L	P	C	I	K	G	Y	D	V	I	A	Q	A	Q	S	G	T	G	K	T	A	T	F	A	I	S	I
Template Known Secondary structure					G	G	G	G													T	T			S			T	T										T	T								S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.							.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.
Query Sequence		Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	.	.	.	.	.	.	D	C	T	S	P
Query Conservation																																																			.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.
Template Conservation
Template Sequence		L	Q	Q	I	E	L	D	L	K	A	T	Q	A	L	V	L	A	P	T	R	E	L	A	Q	Q	I	Q	K	V	V	M	A	L	G	D	Y	M	G	A	S	C	H	A	C	I	G	G	T	N	V	R	A	E	V	Q	K	L	Q	M	E
Template Known Secondary structure							T	T	S		S								S	S															G	G	G	T	T										T	T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		679	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.		700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	.	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L
Query Conservation																							.
Alig confidence																							.																	.
Template Conservation																																								.
Template Sequence		A	P	H	I	I	V	G	T	P	G	R	V	F	D	M	L	N	R	R	Y	L	S	P	K	Y	I	K	M	F	V	L	D	E	A	D	E	M	L	.	S	R	G	F	K	D	Q	I	Y	D	I	F	Q	K	L	N	S	N	T	Q	V
Template Known Secondary structure				S																T	S	S		S	T	T								S						.		T	T	T									T	T	S		T	T
Template Predicted Secondary structure																																								.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		738	.	740	.	.	.	.	.				.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		I	V	T	S	A	T	L	D	.	.	.	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T
Query Conservation										.	.	.
Alig confidence										.	.	.
Template Conservation
Template Sequence		V	L	L	S	A	T	M	P	S	D	V	L	E	V	T	K	K	F	M	R	D	P	I	R	I	L	V	K	K	E	E	L	T	L	E	G	I	R	Q	F	Y	I	N	V	E	R	E	E	W	K	L	D	T	L	C	D	L	Y	E	T
Template Known Secondary structure						S	S											T	T		S	S														T	T									S	S	S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		795	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Sequence		L	T	I	T	Q	A	V	I	F	I	N	T	R	R	K	V	D	W	L	T	E	K	M	H	.	.	.	.	.	.	.	.	.	.	.	A	R	D	F	T	V	S	A	M	D	M	D	Q	K	E	R	D	V	I	M	R	E	F	.	.
Template Known Secondary structure		S			S	S						S														.	.	.	.	.	.	.	.	.	.	.	T	T	T																					.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.																								.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.												.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		855	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R
Query Conservation
Alig confidence		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	V	L	I	T	T	D	L	L	A	R	G	I	D	V	Q	Q	V	S	L	V	I	N	Y	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	N	R	E	N	Y	I	H	R	I	G	R
Template Known Secondary structure		.	.	.	.						S	S	G	G	G	G	S		G	G	G		S					S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	T							S
Template Predicted Secondary structure		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.																			350	.	.	.	.	.	.	.	.	.	360	.	.
		915	.	.	.	.		920	.	.	.	.	.	.	.	.	.	930	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		A	G	R	T	G	.	P	G	K	C	Y	R	L	Y	T	E	R	A	Y
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		G	G	R	F	G	R	K	G	V	A	I	N	M	V	T	E	E	D	K
Template Known Secondary structure			S	S	S	S											S	T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D