Job Description A2A4P0 Confidence 98.52% Date Wed Jul 10 14:06:11 BST 2013 Rank 137 Aligned Residues 145 % Identity 17% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620				.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	.	.	.	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R
Query Conservation																										.	.	.
Alig confidence																										.	.	.											.	.
Template Conservation																																							.	.
Template Sequence		E	E	I	R	K	A	E	K	P	Y	V	I	M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	.	.	F	S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	E	E
Template Known Secondary structure						T	S		S										T	T	S	S															T	T	.	.										T	T
Template Predicted Secondary structure																																							.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Sequence		H	A	K	R	I	G	.	.	.	.	.	.	.	.	.	.	V	K	V	I	K	H	S	Y	G	A	D	.	.	.	.	.	.	P	A	A	V	A	Y	D	A	I	Q	H	A	K	A	R	G	I	D	V	V	L	I	D	T	A	G	R
Template Known Secondary structure						T	T	.	.	.	.	.	.	.	.	.	.							S	T	T			.	.	.	.	.	.																T		S								S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.											.	180	.	.	.	.	.	.	.	.	.							190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		714	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.							.	.	.	.	.	750	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	.	.	.	.	.	.	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F
Query Conservation																																	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	K	P	N	L	V	I	F	V	G	D	A	L	A	G	N	A	I	V	E	Q	A	R	Q	F	N	E	A	V	K	I	D	G	I	I
Template Known Secondary structure				S	S	S																S								T	T		T	T	T												S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D