Job Description A2A4P0 Confidence 98.40% Date Wed Jul 10 14:06:11 BST 2013 Rank 143 Aligned Residues 192 % Identity 21% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		606	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.		.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	.	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q
Query Conservation																						.
Alig confidence																						.																																			.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	.	.	.	.	.
Template Known Secondary structure										T	T	S	S														T	T	T											S	S	T											G	G	G	T	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		665	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L
Query Conservation
Alig confidence		.	.	.	.	.																									.	.	.	.	.	.
Template Conservation		.	.	.	.	.																									.	.	.	.	.	.
Template Sequence		.	.	.	.	.	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	.	.	.	.	.	.	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M
Template Known Secondary structure		.	.	.	.	.							T	T																	.	.	.	.	.	.		T	T		S										S	S
Template Predicted Secondary structure		.	.	.	.	.																									.	.	.	.	.	.
Template SS confidence
							156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.							180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		725	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.				.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	.	.	.	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L
Query Conservation																						.	.	.
Alig confidence																						.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.
Template Sequence		K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	T	I	G	Q	Q	A	Y	N	Q	A	L	A	F	K	E	A	T	P	.	.	.	.	.	.	.	.	.	I	G	S	I	I	V	T	K	L	D	G	S	A	K	G
Template Known Secondary structure											S								G	G	G	G	G	G											S		T	.	.	.	.	.	.	.	.	.	T									S	S		S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240										.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		782	.	.	.	.	.	.	.	790	.	.	.								.	.	.	.	.	.	800	.	.	.									.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.
Predicted Secondary structure														.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query Sequence		D	A	S	L	I	T	V	M	Q	I	H	L	.	.	.	.	.	.	.	T	E	P	P	G	D	I	L	V	F	.	.	.	.	.	.	.	.	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K
Query Conservation														.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	A	L	S	A	V	A	A	T	G	A	P	I	K	F	I	G	T	G	E	K	I	D	D	I	E	P	F	D	P	P	R	F	V	S	R	L	L	G	L	G	D	I	Q	G	L	L	E	K	F	K	E	L	E	K
Template Known Secondary structure										T	T										S	S	S	T	T															T	T	T	T														T
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D