Job Description A2A4P0 Confidence 99.30% Date Wed Jul 10 14:06:11 BST 2013 Rank 66 Aligned Residues 326 % Identity 20% Template c3crw1_ PDB info PDB header:hydrolase Chain: 1: PDB Molecule:xpd/rad3 related dna helicase; PDBTitle: "xpd_apo" Resolution 4.00 Å

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		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K
Query Conservation
Alig confidence																																							.	.	.	.
Template Conservation																																							.	.	.	.
Template Sequence		K	L	K	D	K	V	I	E	G	L	R	N	N	F	L	V	A	L	N	A	P	T	G	S	G	K	T	L	F	S	L	L	V	S	L	E	V	.	.	.	.	K	P	K	V	L	F	V	V	R	T	H	N	E	F	Y	P	I	Y	R
Template Known Secondary structure													T	T									S	S	S	S										T	T	T	.	.	.	.		S							S	S	S	G	G	G
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		653	.	.	.	.	.	.	660	.	.	.	.	.	.	.				.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.			700	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.																																	.	.
Query SS confidence																	.	.	.																																	.	.
Query Sequence		R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	.	.	.	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	.	.	L	T	Q	Y	A	I	I	M
Query Conservation																	.	.	.																																	.	.
Alig confidence																	.	.	.											.																						.	.
Template Conservation																														.
Template Sequence		D	L	T	K	I	R	E	I	T	F	S	F	L	V	G	K	P	S	S	C	L	E	S	E	N	S	L	Y	.	K	A	D	V	I	A	L	T	Y	P	Y	F	F	I	D	R	Y	R	E	F	I	D	I	D	L	R	E	Y	M	I	V
Template Known Secondary structure					S												S	T	T	T							T	T	T	.	T		S						T										T	T	S				S	T	T
Template Predicted Secondary structure																														.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		708	.	710	.	.	.																						.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	E	A	H	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	E	A	H	N	L	D	K	V	N	E	L	E	E	R	S	L	S	E	I	T	I	Q	M	A	I	K	Q	S	K	S	E	E	S	R	R	I	L	S	K	L	L	N	Q	L	R	E	V	V	L	P	D	E	K	Y	I	K	V	E
Template Known Secondary structure				T	G	G	G	S	G	G	G										T	T								S		S	S	S	T														T	T					S	S					S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	P	K	L	S	K	E	E	L	E	I	L	A	D	D	Y	E	D	I	R	K	D	S	L	K	Q	K	I	H	I	G	S	I	L	R	F	F	S	L	L	S	I	G	S	F	I	P	F	S	Y	S	K	R	L	V	I	K	N	P
Template Known Secondary structure		S														T									T	T					T	T	S												S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
												732	.	.	.	.	.	.	.	740	.	.	.	.		.	.	.	.	.	750	.	.	.	.															.	.	.	.	.	760	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	R	Q	D	M	K	L	I	V	T	S	A	T	L	.	D	A	V	K	F	S	Q	Y	F	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	P	I	F	T	I	P	G	R	T	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	S	Y	Y	L	N	L	L	N	D	N	E	L	S	I	I	L	M	S	G	T	L	P	P	R	E	Y	M	E	K	V	W	G	I	K	R	N	M	L	Y	L	D	V	E	R	E	I	Q	K	R	V	S	G	S	Y	E	C	Y	I
Template Known Secondary structure			S	T	T	T	S	G	G	G	G		T	T								S	S										T	T				S											S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		767	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P
Query Conservation
Alig confidence																																																					.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.
Template Sequence		G	V	D	V	T	S	K	Y	D	M	R	S	D	N	M	W	K	R	Y	A	D	Y	L	L	K	I	Y	F	Q	A	K	A	N	V	L	V	V	F	P	S	Y	E	I	M	D	R	V	M	S	R	I	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S					T	T	T																			T	S	S	S							S	S									T	T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		827	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.						.	.	.	.	.	880	.
Predicted Secondary structure																																																		.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.
Query Sequence		D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	.	.	.	.	.	I	Y	Y	V	V	D	P
Query Conservation																																																		.	.	.	.	.
Alig confidence		.	.	.																									.																					.	.	.	.	.
Template Conservation		.	.	.																									.
Template Sequence		.	.	.	S	L	P	K	Y	V	E	S	E	D	S	S	V	E	D	L	Y	S	A	I	S	A	N	N	.	K	V	L	I	G	S	V	G	K	G	K	L	A	E	G	I	E	L	R	N	N	D	R	S	L	I	S	D	V	V	I	V
Template Known Secondary structure		.	.	.		S							S									T	T	S	S	S			.	S							S	S	S	S	S		S	S					S	S	S	S		S
Template Predicted Secondary structure		.	.	.																									.
Template SS confidence
					414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.		.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
		882	.											.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.			.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.																									.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.																									.	.
Query Sequence		G	F	.	.	.	.	.	.	.	.	.	.	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	.	.	A	K	Q	R	A	G	R	A	G	R	T	G	P	G	K	C	Y	R	L	Y	T	E
Query Conservation				.	.	.	.	.	.	.	.	.	.																									.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation
Template Sequence		G	I	P	Y	P	P	P	D	D	Y	L	K	I	L	A	Q	R	V	S	L	K	M	N	R	E	N	E	E	F	L	F	K	I	P	A	L	V	T	I	K	Q	A	I	G	R	A	I	R	D	V	N	D	K	C	N	V	W	L	L	D
Template Known Secondary structure		S							S									T	T	T			S	S	S	T	T					T														T	T			S	S	S									S
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
		930	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	Y	R	D	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	F	E	S	L	Y
Template Known Secondary structure		G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		530	.	.	.	.	.	.