Job Description A2A4P0 Confidence 99.97% Date Wed Jul 10 14:06:11 BST 2013 Rank 18 Aligned Residues 548 % Identity 17% Template c2zj2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative ski2-type helicase; PDBTitle: archaeal dna helicase hjm apo state in form 1 Resolution 2.40 Å Model Dimensions (Å) X:79.202 Y:79.078 Z:54.819

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		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		Y	G	K	K	T	Q	M	S	I	L	E	Q	R	E	S	L	P	I	Y	K	L	K	E	Q	L	V	Q	.	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		R	V	D	E	R	I	K	S	T	L	K	E	R	G	I	E	S	F	Y	P	P	Q	A	E	A	L	K	S	G	I	L	E	G	K	N	A	L	I	S	I	P	T	A	S	G	K	T	L	I	A	E	I	A	M	V	H	R	I	L	T
Template Known Secondary structure			S											T	T			B										T	T	T	G	G	G	T							S		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		633	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.			.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	.	.	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L
Query Conservation																											.	.
Alig confidence																											.	.											.
Template Conservation																																							.
Template Sequence		Q	G	G	K	A	V	Y	I	V	P	L	K	A	L	A	E	E	K	F	Q	E	F	Q	D	W	E	K	I	G	L	R	V	A	M	A	T	G	.	D	Y	D	S	K	D	E	W	L	G	K	Y	D	I	I	I	A	T	A	E	K	F
Template Known Secondary structure				S							S	S	T	T	S								T	G	G	G	G	G	G	T								S	.			S				G	G	G	G	G		S
Template Predicted Secondary structure																																							.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		691	.	.	.	.	.	.	.	.		700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		L	R	E	C	L	I	D	P	D	.	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	D	A	V	K	F
Query Conservation											.
Alig confidence											.																											.
Template Conservation																																						.
Template Sequence		D	S	L	L	R	H	G	S	S	W	I	K	D	V	K	I	L	V	A	D	E	I	H	L	I	G	S	R	D	R	G	A	T	L	E	V	.	I	L	A	H	M	L	G	K	A	Q	I	I	G	L	S	A	T	I	G	N	P	E	E
Template Known Secondary structure								T		G	G	G	G	G								T	G	G	G	G	G		T	T	T							.						B	T	T	B										S
Template Predicted Secondary structure																																						.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770								.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.
Query Sequence		S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	.	.	.	.	.	.	.	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V
Query Conservation																							.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.																								.	.
Template Conservation																																																					.	.
Template Sequence		L	A	E	W	L	N	A	E	L	I	V	S	D	W	R	P	V	K	L	R	R	G	V	F	Y	Q	G	F	V	T	W	E	D	G	S	I	D	R	F	S	S	W	E	E	L	V	Y	D	A	I	R	.	.	K	K	K	G	A	L	I
Template Known Secondary structure						T	T										S	S									T	T					T	T	S						S	S	T										.	.	T	T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.
		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.																									.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	P	V	Y	S
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	N	M	R	R	K	A	E	R	V	A	L	E	L	S	K	K	V	K	S	L	L	T	K	P	E	I	R	A	L	N	E	L	A	D	S	L	E	E	N	P	T	N	E	K	L	A	K	A	I	R	G	G	V	A	F	H	H	A
Template Known Secondary structure				S	S																G	G	G																S			S												T	T						T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		839	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L
Query Conservation
Alig confidence																																.	.	.	.	.																				.	.	.	.	.	.
Template Conservation																																.	.	.	.	.																				.	.	.	.	.	.
Template Sequence		G	L	G	R	D	E	R	V	L	V	E	E	N	F	R	K	G	I	I	K	A	V	V	A	T	P	T	L	S	T	.	.	.	.	.	P	A	F	R	V	I	I	R	D	I	W	R	Y	S	D	F	G	M	E	.	.	.	.	.	.
Template Known Secondary structure		T	S														T	T	S	S							S	T	T			.	.	.	.	.		B	S							S					T	T				.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.	.																				.	.	.	.	.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.						.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		899	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.				920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.			.	940	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.																				.	.											.	.	.	.	.
Query SS confidence																							.	.	.																				.	.											.	.	.	.	.
Query Sequence		V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	.	.	.	P	G	K	C	Y	R	L	Y	T	E	R	A	Y	R	D	E	M	L	T	.	.	T	N	V	P	E	I	Q	R	T	N	.	.	.	.	.
Query Conservation																							.	.	.																				.	.											.	.	.	.	.
Alig confidence		.	.	.																			.	.	.																				.	.											.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	R	I	P	I	I	E	V	H	Q	M	L	G	R	A	G	R	P	K	Y	D	E	V	G	E	G	I	I	V	S	T	S	D	D	P	R	E	V	M	N	H	Y	I	F	G	K	P	E	K	L	F	S	Q	L	S	N	E	S
Template Known Secondary structure		.	.	.												T	T	B			T	T	T		S									S	S	S										T	S	S									T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
			949	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.														.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.
Predicted Secondary structure		.																				.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Query SS confidence		.																				.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Query Sequence		.	L	A	S	T	V	L	S	L	K	A	M	G	I	N	D	L	L	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	M	D	A	P	P	M	E	T	L	I	T	A	M	E	Q	L	Y	T	L	G	A	L	.	.	.
Query Conservation		.																				.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Alig confidence		.																				.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation
Template Sequence		N	L	R	S	Q	V	L	A	L	I	A	T	F	G	Y	S	T	V	E	E	I	L	K	F	I	S	N	T	F	Y	A	Y	Q	R	K	D	T	Y	S	L	E	E	K	I	R	N	I	L	Y	F	L	L	E	N	E	F	I	E	I	S
Template Known Secondary structure														S				S										T	S					T	T																				T	T	S
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
			992	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.					.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.
Predicted Secondary structure		.																																.	.	.	.
Query SS confidence		.																																.	.	.	.
Query Sequence		.	D	D	E	G	L	L	T	R	L	G	R	R	M	A	E	F	P	L	E	P	M	L	C	K	M	L	I	M	S	V	H	.	.	.	.	L	G	C	S	E	E	M	L	T	I	V	S	M	L	S	V	Q	N	V	F	Y	R	P	K
Query Conservation		.																																.	.	.	.
Alig confidence		.																																.	.	.	.
Template Conservation
Template Sequence		L	E	D	K	I	R	P	L	S	L	G	I	R	T	A	K	L	Y	I	D	P	Y	T	A	K	M	F	K	D	K	M	E	E	V	V	K	D	P	N	P	I	G	I	F	H	L	I	S	L	T	P	D	I	T	P	F	N	Y	S	K
Template Known Secondary structure		T	T																T																			S											T	T	S	T	T	S							T
Template Predicted Secondary structure
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
		1047	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.												.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	Q	A	L	A	D	Q	K	K	A	K	F	H	Q	T	E	G	.	.	.	.	.	.	.	.	.	.	.	D	H	L	T	L	L	A	V	Y	N	S	W	K	N	N	K	F	S	N	P	W	C	Y	E	N	F	I	Q	A	R	S
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	E	F	E	R	L	E	E	E	Y	Y	E	F	K	D	R	L	Y	F	D	D	P	Y	I	E	R	K	F	F	R	A	F	K	T	A	L	V	L	L	A	W	I	N	E	V	P	E	G	E	I	V	E	K	Y	S	V	E	P	G	D
Template Known Secondary structure		T	T												T	T	T	S	S		S		S																					T	T											T			T	T
Template Predicted Secondary structure
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.
		1096	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.			.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		L	R	R	A	Q	D	I	R	K	Q	M	L	G	I	M	D	R	H	.	.	K	L	D	V	V	S	C	G	K	S	T	V	R	V	Q	K	A	I	C	S	G	F	F	R	N	A
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		I	Y	R	I	V	E	T	A	E	W	L	V	Y	S	L	K	E	I	A	K	V	L	G	A	Y	E	I	V	D	Y	L	E	T	L	R	V	R	V	K	Y	G	I	R	E	E	L
Template Known Secondary structure																							T	T		G	G	G														T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.