Job Description A2A4P0 Confidence 99.73% Date Wed Jul 10 14:06:11 BST 2013 Rank 46 Aligned Residues 299 % Identity 17% Template c2z0mA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:337aa long hypothetical atp-dependent rna PDBTitle: crystal structure of hypothetical atp-dependent rna2 helicase from sulfolobus tokodaii Resolution 1.90 Å

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		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A
Query Conservation
Alig confidence																																									.	.	.	.
Template Conservation																																									.	.	.	.
Template Sequence		T	E	V	Q	S	K	T	I	P	L	M	L	Q	G	K	N	V	V	V	R	A	K	T	G	S	G	K	T	A	A	Y	A	I	P	I	L	E	L	G	.	.	.	.	M	K	S	L	V	V	T	P	T	R	E	L	T	R	Q	V	A
Template Known Secondary structure														T	T									T	T	S	S													T	.	.	.	.								S	S
Template Predicted Secondary structure																																									.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		652	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.					.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.		700	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.																											.
Query SS confidence																								.	.	.	.																											.
Query Sequence		K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	.	.	.	.	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	.	L	T	Q	Y	A	I	I
Query Conservation																								.	.	.	.																											.
Alig confidence																								.	.	.	.																											.
Template Conservation
Template Sequence		S	H	I	R	D	I	G	R	Y	M	D	T	K	V	A	E	V	Y	G	G	M	P	Y	K	A	Q	I	N	R	V	R	N	A	D	I	V	V	A	T	P	G	R	L	L	D	L	W	S	K	G	V	I	D	L	S	S	F	E	I	V
Template Known Secondary structure								T	T	T	S									T	T	S										T	T		S															T	T	S			G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		707	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.				.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	D	.	.	.	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G
Query Conservation																																									.	.	.
Alig confidence							.																																		.	.	.
Template Conservation							.
Template Sequence		I	I	D	E	A	.	D	L	M	F	E	M	G	F	I	D	D	I	K	I	I	L	A	Q	T	S	N	R	K	I	T	G	L	F	S	A	T	I	P	E	E	I	R	K	V	V	K	D	F	I	T	N	Y	E	E	I	E	A	C	I
Template Known Secondary structure					S		.						T	T													T	T		S							S														S		S							S	G
Template Predicted Secondary structure							.
Template SS confidence
		134	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		764	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S
Query Conservation
Alig confidence																		.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.																																	.	.	.	.	.	.
Template Sequence		G	L	A	N	V	E	H	K	F	V	H	V	K	D	D	W	.	.	.	.	.	.	R	S	K	V	Q	A	L	R	E	N	K	D	K	G	V	I	V	F	V	R	T	R	N	R	V	A	K	L	V	R	L	F	.	.	.	.	.	.
Template Known Secondary structure		G	G	G	G									S	S	S	S	.	.	.	.	.	.									T				S	S						S										T	T		.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.																																	.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.							.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		824	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	D	N	A	I	E	L	R	G	D	L	P	Q	S	V	R	N	R	N	I	D	A	F	R	E	G	E	Y	D	M	L	I	T	T	D	V	A	S	R	G	L	D	I	P	L	V	E	K	V	I	N	F	D	A
Template Known Secondary structure		.	.	.	.	.	.	.	T	T						T	T	S														T	T	S		S										T	T						B	S					S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		884	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.		.	920	.	.	.	.	.	.	.	.	.	930	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	.	G	P	G	K	C	Y	R	L	Y	T	E	R	A	Y
Query Conservation																																					.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	D	L	R	T	Y	I	H	R	I	G	R	T	G	R	M	G	R	K	G	E	A	I	T	F	I	L	N	E	Y	W
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S									T	T	B		G	G	G										S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D