Job Description A2A4P0 Confidence 99.07% Date Wed Jul 10 14:06:11 BST 2013 Rank 85 Aligned Residues 310 % Identity 13% Template c2w74B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:type i restriction enzyme ecor124ii r protein; PDBTitle: mutant (k220r) of the hsdr subunit of the ecor124i2 restriction enzyme in complex with atp Resolution 2.74 Å

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		592	.	.	.	.	.	.	.	600	.	.	.	.											.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.			.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																																.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.																																.	.
Query Sequence		Y	K	L	K	E	Q	L	V	Q	A	V	H	D	.	.	.	.	.	.	.	.	.	.	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	.	.	K	I	G	C
Query Conservation															.	.	.	.	.	.	.	.	.	.																																.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.															.																	.	.
Template Conservation																																							.
Template Sequence		I	A	A	T	E	R	I	L	W	K	I	K	S	S	F	T	A	K	N	W	S	K	P	E	S	G	G	Y	I	W	H	T	T	G	S	G	K	.	T	L	T	S	F	K	A	A	R	L	A	T	E	L	D	F	I	D	K	V	F	F
Template Known Secondary structure																		T	T			S	S	G	G	G	S							T	T	S	S		.												T	T		T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	.	.	.
Query Conservation																																																											.	.	.
Alig confidence																																																											.	.	.
Template Conservation
Template Sequence		V	V	D	R	K	D	L	D	Y	Q	T	M	K	E	Y	Q	R	F	S	P	D	S	V	N	G	S	E	N	T	A	G	L	K	R	N	L	D	K	D	D	N	K	I	I	V	T	T	I	Q	K	L	N	N	L	M	K	A	E	S	D
Template Known Secondary structure					G	G	G											T	T	S	T	T			S	S	S										T	T		T	T																			S
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		697	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.								.
Predicted Secondary structure																																																						.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.
Query Sequence		D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	D	A	V	K	.	.	.	.	.	.	.	F
Query Conservation																																																						.	.	.	.	.	.	.
Alig confidence																		.							.	.	.	.																										.	.	.	.	.	.	.
Template Conservation																		.							.	.	.	.
Template Sequence		L	P	V	Y	N	Q	Q	V	V	F	I	F	D	E	C	H	.	R	S	Q	F	G	E	.	.	.	.	A	Q	K	N	L	K	K	K	F	K	R	Y	Y	Q	F	G	F	T	G	T	P	I	F	P	E	N	A	L	G	S	E	T	T
Template Known Secondary structure			G	G	G	G	S								S			.							.	.	.	.										S									S	S				G	G	G		T	T	S
Template Predicted Secondary structure																		.							.	.	.	.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.					.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
		750	.	.	.	.	.	.	.	.	.	760	.							.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.															.	780	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Q	Y	F	Y	E	A	P	I	F	T	I	.	.	.	.	.	.	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	L	D	A	S	L	I	T	V	M
Query Conservation														.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	V	F	G	R	E	L	H	S	Y	V	I	T	D	A	I	R	D	E	K	V	L	K	F	K	V	D	Y	N	D	V	R	P	Q	F	K	S	L	E	T	E	R	I	Q	E	I	T	Q	Y	I	L	N	N	F	R	Q	K	T	H
Template Known Secondary structure							S													T	T	S	S												T	T	T	T	T	T	T																				T
Template Predicted Secondary structure
Template SS confidence
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
		790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	T	F	P	G	S	K	G	F	N	A	M	L	A	V	S	S	V	D	A	A	K	A	Y	Y	A	T	F	K	P	L	R	I	A	T	I	F	S	F	A	G	E	I	S	D	E	T	F	D	T	A	K	E	F	L	D	A	A	I	R
Template Known Secondary structure				S	T	T											S	S																															S
Template Predicted Secondary structure
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.
																		841	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		E	Y	N	S	H	F	K	T	N	F	S	T	D	S	N	G	F	Q	N	Y	Y	R	D	L	A	Q	R	V	K	N	Q	D	I	D	L	L	I	V	V	G	M	F	L	T	G	F	D	A	P	T	L	N	T	L	F	.	.	.	.	.
Template Known Secondary structure								T					S	S																	T	T	S	S	S					S	S	T	T	S	S	S				T	T						.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
		885	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.		920	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	.	P	G	K	C	Y	R	L
Query Conservation																																					.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	K	N	L	R	Y	H	G	L	M	Q	A	F	S	R	T	N	R	I	Y	D	A	T	K	T	F	G	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.			S												G	G	G						T	T			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																673	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D