Job Description A2A4P0 Confidence 99.11% Date Wed Jul 10 14:06:11 BST 2013 Rank 80 Aligned Residues 315 % Identity 22% Template c2vl7A_ PDB info PDB header:unknown function Chain: A: PDB Molecule:xpd; PDBTitle: structure of s. tokodaii xpd4 Resolution 2.25 Å

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		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K
Query Conservation
Alig confidence																																							.	.	.	.												.	.	.	.
Template Conservation																																							.	.	.	.												.	.	.	.
Template Sequence		E	K	L	G	E	A	I	N	A	L	K	H	G	K	T	L	L	L	N	A	K	P	G	L	G	K	T	V	F	V	E	V	L	G	M	Q	L	.	.	.	.	K	K	K	V	L	I	F	T	R	T	H	.	.	.	.	S	Q	L	D
Template Known Secondary structure													T	T									T	T	S														.	.	.	.	T								S			.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.												.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.					.	.	.	.
		653	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.									.	.	.	700	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.
Query Sequence		R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	.	.	.	.	.	.	.	.	D	P	D	L	T	Q	Y	A
Query Conservation																																														.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.																																		.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.
Template Sequence		S	I	Y	K	N	A	.	.	.	.	.	K	L	L	G	L	K	T	G	F	L	R	A	N	L	K	D	K	D	V	I	A	M	T	Y	P	Y	L	F	Q	K	P	I	R	N	S	V	F	C	N	K	D	D	C	L	K	L	E	D	Y
Template Known Secondary structure								.	.	.	.	.	G	G	G	T								T	T	G	G	G		S						T					S								S		S	S	T	T	S			G	G	G
Template Predicted Secondary structure								.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		705	.	.	.	.	710	.	.										.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	M	L	D	E	A	H	.	.	.	.	.	.	.	.	.	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	V	I	D	E	A	H	N	L	L	E	A	D	K	W	F	T	R	K	I	S	R	K	M	L	E	R	A	L	K	E	I	E	I	V	E	R	L	N	R	I	D	A	K	K	V	K	D	Y	I	N	L	L	I	D	Y	M	S	K
Template Known Secondary structure						T	T	G	G	G	G	G	G	G	G	G	G	G																						T	T																				T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	K	D	G	R	C	H	E	L	S	L	M	P	L	P	D	R	E	T	N	G	E	L	I	V	V	T	R	A	Y	L	N	I	D	E	G	P	V	K	K	S	S	L	K	S	L	L	K	F	V	E	M	K	G	D	L	Y	N	C
Template Known Secondary structure		S			S	S	S					S																						T	T			S	S	S														S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
																					732	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	D	M	K	L	I	V	T	S	A	T	L	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.														.
Template Conservation																																				.	.	.														.
Template Sequence		N	G	S	L	V	K	V	P	S	D	V	N	Q	L	I	E	D	A	L	N	V	K	T	F	K	V	L	M	S	G	T	L	P	E	.	.	.	S	L	T	L	T	N	S	Y	K	I	V	V	N	.	E	S	G	R	G	E	Y	Y	Y
Template Known Secondary structure		T	T							S										T			S	S							S	S			T	.	.	.	T				T	T								.
Template Predicted Secondary structure																																				.	.	.														.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.				.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.
		773	.	.	.	.							.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.
Query Sequence		T	K	E	P	E	.	.	.	.	.	.	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P
Query Conservation							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																				.																						.	.	.	.	.	.	.	.
Template Conservation																																.																						.	.	.	.	.	.	.	.
Template Sequence		C	P	N	V	T	S	E	L	R	K	R	N	S	N	I	P	I	Y	S	I	L	L	K	R	I	Y	E	N	S	S	.	K	S	V	L	V	F	F	P	S	Y	E	M	L	E	S	V	R	I	H	L	S	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T					G	G	G																		T		S	.	S							S										T	T		T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.																						.	.	.	.	.	.	.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.		.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		827	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.					.	870	.	.	.	.	.	.	.	.	.	880	.	.
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	.	.	.	.	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G
Query Conservation																																												.	.	.	.
Alig confidence		.	.	.																						.	.	.	.															.	.	.	.									.	.	.
Template Conservation		.	.	.																						.	.	.	.																											.	.	.
Template Sequence		.	.	.	G	I	P	V	I	E	E	N	K	K	T	R	H	E	E	V	L	E	L	M	K	.	.	.	.	T	G	K	Y	L	V	M	L	V	M	L	F	E	S	L	V	L	A	G	L	P	Y	P	N	V	S	.	.	.	D	D	M
Template Known Secondary structure		.	.	.	T	S					S	T	T	T												.	.	.	.	T	S																	S						T	T	.	.	.	S
Template Predicted Secondary structure		.	.	.																						.	.	.	.																											.	.	.
Template SS confidence
					406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.					.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.				.	.	.
		883	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.			.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	.	.	Q	A	K	Q	R	A	G	R	A	G	R	T	G	P	G	K	C	Y	R	L	Y	T	E	R	A	Y	R	D	E	M	L	T	T	N
Query Conservation																										.	.
Alig confidence																										.	.
Template Conservation
Template Sequence		V	R	K	R	I	E	R	L	S	K	L	T	G	K	D	E	D	S	I	I	H	D	L	T	A	I	V	I	K	Q	T	I	G	R	A	F	R	D	P	N	D	Y	V	K	I	Y	L	C	D	S	R	Y	R	E	Y	F	A	D	L	G
Template Known Secondary structure														T																									S	T	T									S	G	G	G	G	G	G	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		941	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	E
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		531	.	.