Job Description A2A4P0 Confidence 99.97% Date Wed Jul 10 14:06:11 BST 2013 Rank 19 Aligned Residues 276 % Identity 20% Template c2v6jA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rna helicase; PDBTitle: kokobera virus helicase: mutant met47thr Resolution 2.30 Å Model Dimensions (Å) X:65.035 Y:73.866 Z:41.277

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		606	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	T	V	L	D	L	H	P	G	A	G	K	T	R	R	V	L	P	Q	L	V	R	E	A	V	K	K	R	L	R	T	V	I	L	A	P	T	R	V	V	A	S	E	T	Y	E	A	L	R	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T	S		T	T	T	T												T	T								S	S											T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
		666	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L
Query Conservation
Alig confidence		.							.	.	.	.
Template Conservation		.							.	.	.	.
Template Sequence		.	G	E	P	I	R	Y	.	.	.	.	M	G	N	E	I	V	D	F	M	C	H	S	T	F	T	M	K	L	L	Q	G	V	R	V	P	N	Y	N	L	Y	I	M	D	E	A	H	F	L	D	P	A	S	V	A	A	R	G	Y	I
Template Known Secondary structure		.	T	S					.	.	.	.					S																T							S						T	T	T			S
Template Predicted Secondary structure		.							.	.	.	.
Template SS confidence
			53	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		726	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L
Query Conservation
Alig confidence								.													.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation								.													.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Sequence		E	T	R	V	S	M	.	G	D	A	G	A	I	F	M	T	A	T	P	.	.	.	.	.	.	.	.	.	.	P	G	T	T	E	A	F	P	P	S	N	S	P	I	I	D	E	E	T	R	I	P	D	K	A	W	N	S	.	.	.
Template Known Secondary structure								.	T	S								S	S		.	.	.	.	.	.	.	.	.	.	T	T				S	S				S	S											S	S			S	S	.	.	.
Template Predicted Secondary structure								.													.	.	.	.	.	.	.	.	.	.																													.	.	.
Template SS confidence
		117	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.											.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		786	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q
Query Conservation
Alig confidence		.	.	.																																	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	G	Y	E	W	I	T	E	F	D	G	R	T	V	W	F	V	H	S	I	K	Q	G	A	E	I	G	T	C	L	Q	K	A	.	.	.	.	.	.	.	.	.	G	K	K	V	L	Y	L	N	R	K	T	F	E	S	E	Y
Template Known Secondary structure		.	.	.							S		S	S							S	S														T	.	.	.	.	.	.	.	.	.	T								T	T	T					S
Template Predicted Secondary structure		.	.	.																																	.	.	.	.	.	.	.	.	.
Template SS confidence
					163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.										.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		846	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q
Query Conservation
Alig confidence							.	.	.	.																				.																			.
Template Conservation							.	.	.	.																				.																			.
Template Sequence		P	K	C	K	S	.	.	.	.	E	K	W	D	F	V	I	T	T	D	I	S	E	M	G	A	N	F	K	.	A	D	R	V	I	D	P	R	K	T	I	K	P	I	L	L	D	G	.	R	V	S	M	Q	G	P	I	A	I	T	P
Template Known Secondary structure		T					.	.	.	.	S			S						G	G	G	T	T	S					.		S															S	S	.	S
Template Predicted Secondary structure							.	.	.	.																				.																			.
Template SS confidence
		211	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.
		906	.	.	.	910	.	.	.	.	.	.	.	.	.			920	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	.	.	P	G	K	C	Y	R	L	Y	T
Query Conservation																.	.
Alig confidence																.	.
Template Conservation
Template Sequence		A	S	A	A	Q	R	R	G	R	I	G	R	N	P	E	K	L	G	D	I	Y	A	Y	S	G
Template Known Secondary structure									T	T	S	S			T	T										S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D