Job Description A2A4P0 Confidence 97.62% Date Wed Jul 10 14:06:11 BST 2013 Rank 170 Aligned Residues 134 % Identity 20% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		606	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.		.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	.	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q
Query Conservation																						.
Alig confidence																						.																																						.	.
Template Conservation																																																												.	.
Template Sequence		N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	.	.
Template Known Secondary structure										S	S	S	S	T	T																							S				T	T	G	G	G	S	S							S	S				.	.
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		665	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	.	.	.	.	.	.	.	.	E	K	F	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M
Template Known Secondary structure		.	.	.	.	.	.	.				S	S	S			S	S	S	T	T						.	.	.	.	.	.	.	.		T	T	S	S		S									S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template SS confidence
									159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.									.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		725	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.			.	.	.	.	.	750	.	.	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	.	.	D	A	V	K	F	S	Q	Y	F	Y	E	A
Query Conservation																						.	.
Alig confidence																						.	.
Template Conservation
Template Sequence		K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	Q	Q	A	G	I	Q	A	K	A	F	K	E	A
Template Known Secondary structure				T	T	S	S	S			S								G	G	G	G	G	G										T	T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D