Job Description A2A4P0 Confidence 99.97% Date Wed Jul 10 14:06:11 BST 2013 Rank 15 Aligned Residues 500 % Identity 20% Template c2p6uA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase Resolution 3.14 Å Model Dimensions (Å) X:69.922 Y:72.386 Z:54.118

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		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		F	P	P	Q	A	E	A	V	E	K	V	F	S	G	K	N	L	L	L	A	M	P	T	A	A	G	K	T	L	.	L	A	E	M	A	M	V	R	E	A	I	K	G	G	K	S	L	Y	V	V	P	L	R	A	L	A	G	E	K	Y
Template Known Secondary structure				S	S	T							T	T		S							S	S							.													T								S	S
Template Predicted Secondary structure																															.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		652	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.				670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.		700	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.																															.
Query SS confidence																				.	.	.																															.
Query Sequence		K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	.	.	.	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	.	L	T	Q	Y	A	I	I	M
Query Conservation																				.	.	.																															.
Alig confidence										.	.									.	.	.																															.
Template Conservation										.	.
Template Sequence		E	S	F	K	K	W	E	K	.	.	I	G	L	R	I	G	I	S	T	G	D	Y	E	S	R	D	E	H	L	G	D	C	D	I	I	V	T	T	S	E	K	A	D	S	L	I	R	N	R	A	S	W	I	K	A	V	S	C	L	V
Template Known Secondary structure					G	G	G	G	T	.	.	T	T								S			S				T	T	G	G	G		S															T	T		S	S	G	G	G
Template Predicted Secondary structure										.	.
Template SS confidence
		86	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		708	.	710	.	.	.	.	.	.	.	.			.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		L	D	E	A	H	E	R	T	I	H	T	.	.	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		V	D	E	I	H	L	L	D	S	E	K	R	G	A	T	L	E	I	L	V	T	K	M	R	R	M	N	K	A	L	R	V	I	G	L	S	A	T	A	P	N	V	T	E	I	A	E	W	L	D	A	D	Y	Y	V	S	D	W	R	P
Template Known Secondary structure			T	T	G	G	G	G	G		T	T	T																T	T											T	T									T										S
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		766	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.									.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.
Query Sequence		Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	.	.	.	.	.	.	.	.	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L
Query Conservation																					.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.													.
Template Conservation																																									.
Template Sequence		V	P	L	V	E	G	V	L	C	E	G	T	L	E	L	F	D	G	A	F	S	T	S	R	R	V	K	F	E	E	L	V	E	E	C	V	A	E	N	.	G	G	V	L	V	F	E	S	T	R	R	G	A	E	K	T	A	V	K	L
Template Known Secondary structure		S									T	T							T	T						B														T	.	S							S	S
Template Predicted Secondary structure																																									.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		818	.	820	.	.	.	.	.	.	.	.	.	830	.	.																						.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	I	T	A	K	Y	V	E	N	E	G	L	E	K	A	I	L	E	E	N	E	G	E	M	S	R	K	L	A	E	C	V	R	K	G	A	A	F	H	H	A	G	L	L	N	G	Q	R	R	V	V	E	D	A	F	R	R	G	N
Template Known Secondary structure							T	T												T	T			S												T	S						T	T	S															T	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		857	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G
Query Conservation
Alig confidence									.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	V	V	V	A	T	.	.	.	.	P	T	L	V	N	L	P	A	R	R	V	I	V	R	S	L	Y	R	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	K	V	S	E	Y	K	Q	M	A	G	R	A	G
Template Known Secondary structure									.	.	.	.	T	T							S							S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T
Template Predicted Secondary structure									.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.					330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.															350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		917	.	.				920	.	.	.	.	.	.	.	.	.	930	.					.	.	.	.	.	.	.	.	940	.	.									.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.
Predicted Secondary structure					.	.	.													.	.	.	.												.	.	.	.	.	.	.	.
Query SS confidence					.	.	.													.	.	.	.												.	.	.	.	.	.	.	.
Query Sequence		R	T	G	.	.	.	P	G	K	C	Y	R	L	Y	T	E	R	A	.	.	.	.	Y	R	D	E	M	L	T	T	N	V	P	.	.	.	.	.	.	.	.	E	I	Q	R	T	N	L	A	S	T	V	L	S	L	K	A	M	G	I
Query Conservation					.	.	.													.	.	.	.												.	.	.	.	.	.	.	.
Alig confidence					.	.	.													.	.	.	.												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	P	G	M	D	E	R	G	E	A	I	I	I	V	G	K	R	D	R	E	I	A	V	K	R	Y	I	F	G	E	P	E	R	I	T	S	K	L	G	V	E	T	H	L	R	F	H	S	L	S	I	I	C	D	G	Y	A	K	T	L
Template Known Secondary structure			T	T	T		S	S									S	S		T						T	T	T	S										T	T	S															T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		962	.	.	.	.	.								.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.			.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.
Predicted Secondary structure								.	.	.	.	.	.	.																															.	.
Query SS confidence								.	.	.	.	.	.	.																															.	.
Query Sequence		N	D	L	L	S	F	.	.	.	.	.	.	.	D	F	M	D	A	P	P	M	E	T	L	I	T	A	M	E	Q	L	Y	T	L	G	A	L	D	D	E	G	L	L	.	.	T	R	L	G	R	R	M	A	E	F	P	L	E	P	M
Query Conservation								.	.	.	.	.	.	.																															.	.
Alig confidence								.	.	.	.	.	.	.																															.	.
Template Conservation
Template Sequence		E	E	L	E	D	F	F	A	D	T	F	F	F	K	Q	N	E	I	S	L	S	Y	E	L	E	R	V	V	R	Q	L	E	N	W	G	M	V	V	E	A	A	H	L	A	P	T	K	L	G	S	L	V	S	R	L	Y	I	D	P	L
Template Known Secondary structure										T	S																								T	T	S				S	S	S														T
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		1013	.	.	.	.	.	.	1020	.	.	.	.	.				.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.										.	.	1060
Predicted Secondary structure															.	.	.																																	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.																																	.	.	.	.	.	.	.	.	.
Query Sequence		L	C	K	M	L	I	M	S	V	H	L	G	C	.	.	.	S	E	E	M	L	T	I	V	S	M	L	S	V	Q	N	V	F	Y	R	P	K	D	K	Q	A	L	A	D	Q	K	K	A	.	.	.	.	.	.	.	.	.	K	F	H
Query Conservation															.	.	.																																	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	F	I	F	H	D	V	L	S	R	M	E	L	S	D	I	G	A	L	H	L	I	C	R	T	P	D	M	E	R	L	T	V	R	K	T	D	S	W	V	E	E	E	A	F	R	L	R	K	E	L	S	Y	Y	P	S	D	F	S
Template Known Secondary structure																									T	T	S	T	T	S							T	T											T	T	T	T	S	S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
		1061	.	.	.	.	.	.	.	.	1070	.				.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		Q	T	E	G	D	H	L	T	L	L	A	.	.	.	V	Y	N	S	W	K	N	N	K	F	S	N	P	W	C	Y	E	N	F	I	Q	A	R	S	L	R	R	A	Q	D	I	R	K	Q	M	L	G	I	M	D	R	H
Query Conservation													.	.	.
Alig confidence													.	.	.
Template Conservation
Template Sequence		V	E	Y	D	W	F	L	S	E	V	K	T	A	L	C	L	K	D	W	I	E	E	K	D	E	D	E	I	C	A	K	Y	G	I	A	P	G	D	L	R	R	I	V	E	T	A	E	W	L	S	N	A	M	N	R	I
Template Known Secondary structure		T	T																			T	T											T
Template Predicted Secondary structure
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.