Job Description A2A4P0 Confidence 99.67% Date Wed Jul 10 14:06:11 BST 2013 Rank 50 Aligned Residues 304 % Identity 13% Template c2ocaA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase uvsw; PDBTitle: the crystal structure of t4 uvsw Resolution 2.70 Å

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		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	H	W	Y	Q	K	D	A	V	F	E	G	L	V	N	R	R	R	I	L	N	L	P	T	S	A	G	R	S	L	I	Q	A	L	L	A	R	Y	Y	L	E	N	Y	E	G	K	I	L	I	I	V	P	T	T	A	L	T	T	Q
Template Known Secondary structure																		S								S	T	T	T																	S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.				.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	.	.	.	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I
Query Conservation																										.	.	.
Alig confidence							.																			.	.	.																								.	.
Template Conservation							.																																													.	.
Template Sequence		M	A	D	D	F	.	V	D	Y	R	L	F	S	H	A	M	I	K	K	I	G	G	G	A	S	K	D	D	K	Y	K	N	D	A	P	V	V	V	G	T	W	Q	T	V	V	K	Q	P	K	E	.	.	W	F	S	Q	F	G	M	M
Template Known Secondary structure							.			T	T	S	S		G	G	G					G	G	G			T	T	G	G	G		T	T		S										T	T	S		G	G	.	.	G	G	G	G
Template Predicted Secondary structure							.																																													.	.
Template SS confidence
		173	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.
		707	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.					.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence		M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	.	.	.	.	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P
Query Conservation																																								.	.	.	.
Alig confidence														.	.	.	.	.																						.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		M	N	D	E	C	H	L	A	T	G	K	S	.	.	.	.	.	I	S	S	I	I	S	G	L	N	N	C	M	F	K	F	G	L	S	G	S	L	R	D	G	K	A	N	I	M	Q	Y	V	G	M	F	G	E	I	F	K	P	V	T
Template Known Secondary structure					T	G	G	G						.	.	.	.	.					G	G	G		T	T									S		G	G	G		S	S											S
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.						.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		763	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.																				.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	E	L	K	I	N	S	I	F	L	R	Y	P	D	E	F	T	T	K	L	K	G	K	T	Y	Q	E	E	I	K	I	I	T	G	L	S	K	R	N	K	W	I	A	K	L	A	I	K	L	A	Q	K	D	E	N	A	F	V	M
Template Known Secondary structure																							T	T												T																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		804	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.		.	860	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	.	V	V	I	A
Query Conservation																																																									.
Alig confidence																			.	.	.	.	.	.	.	.	.																														.
Template Conservation																			.	.	.	.	.	.	.	.	.
Template Sequence		F	K	H	V	S	H	G	K	A	I	F	D	L	I	K	N	E	.	.	.	.	.	.	.	.	.	Y	D	K	V	Y	Y	V	S	G	E	V	D	T	E	T	R	N	I	M	K	T	L	A	E	N	G	K	G	I	I	I	V	A	S
Template Known Secondary structure			S	S													T	T	.	.	.	.	.	.	.	.	.		S	S					S	S	S	T	T																S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370										.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		863	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	P	G	K
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	V	F	S	T	G	I	S	V	K	N	L	H	H	V	V	L	A	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	S	K	I	I	V	L	Q	T	I	G	R	V	L	R	K	H	G	S	K
Template Known Secondary structure								S					S							S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S													T	T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.																			.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
			923	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	C	Y	R	L	Y	T
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		T	I	A	T	V	W	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		447	.	.	450	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D