Job Description A2A4P0 Confidence 98.59% Date Wed Jul 10 14:06:11 BST 2013 Rank 130 Aligned Residues 139 % Identity 18% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630			.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	.	.	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D
Template Known Secondary structure		S	S								S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S											T	T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		662	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.																								.
Template Conservation			.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.																								.
Template Sequence		F	.	.	.	.	.	.	.	.	.	F	P	S	D	V	G	Q	K	P	V	.	.	.	.	.	.	.	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	.	G	R	L	H	V	D	E	A	M
Template Known Secondary structure			.	.	.	.	.	.	.	.	.				S	S				T	T	.	.	.	.	.	.	.													T	T		S								.				S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.																								.
Template SS confidence
		159										160	.	.	.	.	.	.	.	.	.								170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.
		722	.	.	.	.	.	.	.		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.							.	.	.	.	.	750	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.																.	.	.	.	.	.
Query SS confidence										.																.	.	.	.	.	.
Query Sequence		F	G	L	L	K	K	T	V	.	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	.	.	.	.	.	.	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F
Query Conservation										.																.	.	.	.	.	.
Alig confidence										.																.	.	.	.	.	.
Template Conservation
Template Sequence		M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V	V
Template Known Secondary structure															S								T	T	T	G	G	G	G									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D