Job Description A2A4P0 Confidence 99.72% Date Wed Jul 10 14:06:11 BST 2013 Rank 48 Aligned Residues 339 % Identity 17% Template c2i4iA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase ddx3x; PDBTitle: crystal structure of human dead-box rna helicase ddx3x Resolution 2.20 Å

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		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	W	K	K	H	A	F	G	G	N	K	A	S	Y	G	K	K	T	Q	M	S	I	L	E	Q	R	E	S	L	P	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	N	N	C	P	P	H	I	E	S	F	S	D	V	E	M	G	E	I	I	M	G	N	I	E	L	T	R	Y	T	R	P	T	P	V	Q	K	H	A	I	P	I	I	K	E	K	R	D	L	M	A	C	A	Q	T	G	S	G	K	T
Template Known Secondary structure		S	T	T						S	S	G	G	G	S														T			S														T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		620			.	.	.	.	.	.																			.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	.	.	Q	I	T	Q	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G
Query Conservation			.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	F	L	L	P	I	L	S	Q	I	Y	S	D	G	P	G	E	A	L	R	A	M	K	E	N	G	R	Y	G	R	R	K	Q	Y	P	I	S	L	V	L	A	P	T	R	E	L	A	V	Q	I	Y	E	E	A	R	K	F	S	Y
Template Known Secondary structure																												B	T	T	B	S		S	B			S						S	S																T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		660	.	.	.	.	.	.	.	.	.	670	.	.	.	.							.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.		700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure																	.	.	.	.	.	.																										.
Query SS confidence																	.	.	.	.	.	.																										.
Query Sequence		C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	.	.	.	.	.	.	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	.	L	T	Q	Y	A	I	I	M	L	D	E	A	H
Query Conservation																	.	.	.	.	.	.																										.
Alig confidence		.															.	.	.	.	.	.																										.
Template Conservation		.
Template Sequence		.	R	S	R	V	R	P	C	V	V	Y	G	G	A	D	I	G	Q	Q	I	R	D	L	E	R	G	C	H	L	L	V	A	T	P	G	R	L	V	D	M	M	E	R	G	K	I	G	L	D	F	C	K	Y	L	V	L	D	E	A	D
Template Known Secondary structure		.	T	S	S								S	S	S										T	T			S															T	T	S	B			T	T							S	S
Template Predicted Secondary structure		.
Template SS confidence
			292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		713	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.				730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.			.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.																	.	.
Query SS confidence																			.	.	.																	.	.
Query Sequence		E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	.	.	.	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	D	.	.	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P
Query Conservation																			.	.	.																	.	.
Alig confidence																			.	.	.																	.	.
Template Conservation
Template Sequence		R	M	L	D	M	G	F	E	P	Q	I	R	R	I	V	E	Q	D	T	M	P	P	K	G	V	R	H	T	M	M	F	S	A	T	F	P	K	E	I	Q	M	L	A	R	D	F	L	D	E	Y	I	F	L	A	V	G	T	S	E	N
Template Known Secondary structure						T	T										T	S	S	S				B	T	T	B							S															S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		768	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D
Query Conservation
Alig confidence																							.	.	.																														.	.	.	.	.	.	.
Template Conservation																							.	.	.																														.	.	.	.	.	.	.
Template Sequence		I	T	Q	K	V	V	W	V	E	E	S	D	K	R	S	F	L	L	D	L	L	.	.	.	N	A	T	G	K	D	S	L	T	L	V	F	V	E	T	K	K	G	A	D	S	L	E	D	F	L	Y	H	E	.	.	.	.	.	.	.
Template Known Secondary structure											G	G	G										.	.	.		T			T	T								S	S														T	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.																														.	.	.	.	.	.	.
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.				.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		828	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K
Query Conservation
Alig confidence		.	.																																																							.	.	.	.
Template Conservation		.	.																																																							.	.	.	.
Template Sequence		.	.	G	Y	A	C	T	S	I	H	G	D	R	S	Q	R	D	R	E	E	A	L	H	Q	F	R	S	G	K	S	P	I	L	V	A	T	A	V	A	A	R	G	L	D	I	S	N	V	K	H	V	I	N	F	D	L	.	.	.	.
Template Known Secondary structure		.	.	T								T	T	S															T	S	S											T	T	S											S	S		.	.	.	.
Template Predicted Secondary structure		.	.																																																							.	.	.	.
Template SS confidence
				465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
		888	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	P	G	K	C	Y	R	L	Y	T	E	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	D	I	E	E	Y	V	H	R	I	G	R	T	G	R	.	N	L	G	L	A	T	S	F	F	N	E	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S									T	T	B			.											G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
																519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.		.	.	.	.	.	540	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D