Job Description A2A4P0 Confidence 99.53% Date Wed Jul 10 14:06:11 BST 2013 Rank 58 Aligned Residues 293 % Identity 19% Template c2fwrA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad25; PDBTitle: structure of archaeoglobus fulgidis xpb Resolution 2.60 Å

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		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	S	L	P	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V
Query Conservation
Alig confidence																																															.	.	.	.											.
Template Conservation																																															.	.	.	.											.
Template Sequence		D	A	E	I	S	L	R	D	Y	Q	E	K	A	L	E	R	W	L	V	D	K	R	G	C	I	V	L	P	T	G	S	G	K	T	H	V	A	M	A	A	I	N	E	L	S	.	.	.	.	T	P	T	L	I	V	V	P	T	L	.
Template Known Secondary structure							B												T	T	T	T								T	T	S															.	.	.	.	S							S	S		.
Template Predicted Secondary structure																																															.	.	.	.											.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I
Query Conservation
Alig confidence		.	.	.																																																	.	.	.	.	.
Template Conservation		.	.	.																																																	.	.	.	.	.
Template Sequence		.	.	.	A	L	A	E	Q	W	K	E	R	L	G	I	F	G	E	E	Y	V	G	E	F	S	G	R	I	K	E	L	K	P	L	T	V	S	T	Y	D	S	A	Y	V	N	A	E	K	L	G	N	.	.	.	.	.	R	F	M	L
Template Known Secondary structure		.	.	.										G	G	G	G		G	G	G				B	S	S	S		B				S												T					T	T	.	.	.	.	.	T		S
Template Predicted Secondary structure		.	.	.																																																	.	.	.	.	.
Template SS confidence
					144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.						.	.	.	.
		706	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.					.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	.	.	.	.	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I
Query Conservation																																									.	.	.	.
Alig confidence															.	.	.	.	.	.																					.	.	.	.
Template Conservation															.	.	.	.	.	.
Template Sequence		L	I	F	D	E	V	H	H	L	P	A	E	S	.	.	.	.	.	.	Y	V	Q	I	A	Q	M	S	I	A	P	F	R	L	G	L	T	A	T	F	E	R	E	D	G	R	H	E	I	L	K	E	V	V	G	G	K	V	F	E	L
Template Known Secondary structure						T	G	G	G	T	T	S	T	T	.	.	.	.	.	.	T						T				S							S					T	T	S	G	G	G	S					T
Template Predicted Secondary structure															.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.							.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		762	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	P	D	S	L	A	G	K	H	L	A	K	Y	T	I	K	R	I	F	V	P	L	A	E	D	E	R	V	E	Y	E	K	R	E	K	V	Y	K	Q	F	L	R	A	R	G	I	T	L	R	R	A	E	D	F	N	K	I	V	M	A
Template Known Secondary structure							T	S					S																		T	T	T	T	T					S		S	S	S				T	T	T			S	S	S	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
																									781	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	Y	D	E	R	A	Y	E	A	L	R	A	W	E	E	A	R	R	I	A	F	N	S	K	N	K	I	R	K	L	R	E	I	L	E	R	H	R	K	D	K	I	I	I	F	T	R	H	N	E	L	V	Y	R	I	S	K	V	F
Template Known Secondary structure		T			S	S	S	S	S	T	T	T												S		S													T	S	S	S		B			B		S												T
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		818	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	A	I	T	H	R	T	S	R	E	E	R	E	E	I	L	E	G	F	R	T	G	R	F	R	A	I	V	S	S	Q	V	L	D	E	G	I	D	V	P	D	A	N	V
Template Known Secondary structure		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B			S	S	S		S					T								S	S		S	B		B		S	S				S	S	S		S			B	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		370															.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		878	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.					.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.
Query SS confidence																																															.	.	.	.
Query Sequence		V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	P	G	K	.	.	.	.	C	Y	R	L	Y	T	E
Query Conservation																																															.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	M	S	G	S	G	S	A	R	E	Y	I	Q	R	L	G	R	I	L	R	P	S	K	G	K	K	E	A	V	L	Y	E	L	I	S	R
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S												S	B				T	T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		416	.																			.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D