Job Description A2A4P0 Confidence 99.60% Date Wed Jul 10 14:06:11 BST 2013 Rank 53 Aligned Residues 365 % Identity 20% Template c2fsgB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli Resolution 2.20 Å

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		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	A	Q	R	E	A	E	M	D	S	I	P	M	G	L	N	K	H	W	V	D	P	L	P	D	A	E	G	R	Q	I	A	A	N	M	R	G	I	G	M	M	P	N	D	I	P	E	W	K	K	H	A	F	G	G	N	K	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	T	L	R	R	X	R	K	V	V	N	I	I	N	A	X	E	P	E	X	E	K	L	S	D	E	E	L	K	G	K	T	A	E	F	R	A	R	L	E	K	G	E	V	L	E	N	L	I	P	E	A	F	A	V	V	R	E	A
Template Known Secondary structure																									S																		T	T			G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	K	K	T	Q	M	S	I	L	E	Q	R	E	S	L	P	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	S	K	R	V	F	G	X	R	H	F	D	V	Q	L	L	G	G	X	V	L	N	E	R	C	I	A	E	X	R	T	G	E	G	K	T	L	T	A	T	L	P	A	Y	L	N	A	L	T	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.					T	S														T	T	S	S							T	T	S						T							T	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		634	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.				660	.	.	.	.	.	.	.	.	.	670	.	.	.	.					.	.	.	.	.	680	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.																.	.	.	.
Query SS confidence																												.	.	.																.	.	.	.
Query Sequence		R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	.	.	.	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	.	.	.	.	C	T	S	P	E	T	V	I	K	Y	M	T
Query Conservation																												.	.	.																.	.	.	.
Alig confidence									.				.	.	.	.												.	.	.																.	.	.	.
Template Conservation									.				.	.	.	.
Template Sequence		K	G	V	H	V	V	T	.	V	N	D	.	.	.	.	Y	L	A	Q	R	D	A	E	N	N	R	P	L	F	E	F	L	G	L	T	V	G	I	N	L	P	G	X	P	A	P	A	K	R	E	A	Y	A	A	D	I	T	Y	G	T
Template Known Secondary structure		S							.	S	S		.	.	.	.																	T	T								T	T												S	S
Template Predicted Secondary structure									.				.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130		.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		687	.	.	690		.	.	.	.								.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.
Predicted Secondary structure						.					.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.					.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	G	M	L	.	L	R	E	C	.	.	.	.	.	.	.	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.					.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.					.	.	.	.	.	.	.																		.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		N	N	E	Y	G	F	D	Y	L	R	D	N	X	A	F	S	P	E	E	R	V	Q	R	K	L	H	Y	A	L	V	D	E	V	.	D	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G	P	A	E	D	S	S	E	X	Y	K
Template Known Secondary structure													T	T		S	S	G	G	G												S			.				T	T	T	T	T	T								S
Template Predicted Secondary structure																																			.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
																																				717	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation
Template Sequence		R	V	N	K	I	I	P	H	L	I	R	V	L	I	E	E	L	L	V	K	E	G	I	X	D	E	G	E	S	L	Y	S	P	A	N	I	X	L	X	H	H	V	T	A	A	L	R	A	H	Q	N	E	N	Q	T	L	A	S	I	T
Template Known Secondary structure						T	S	S	S											S		S	S	S	S	T	T	T			T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
															740	.	.	.	.			.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.				.	.	.	.	780	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.						.	.																																.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.						.	.																																.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	A	T	L	.	.	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	.	.	.	P	E	T	D	Y	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.						.	.																																.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.						.	.										.																						.	.	.
Template Conservation																															.
Template Sequence		F	Q	N	Y	F	R	L	Y	E	K	L	A	G	X	T	G	T	A	D	T	E	A	F	E	F	S	S	I	Y	.	K	L	D	T	V	V	V	P	T	N	R	P	X	I	R	K	D	L	P	D	L	V	Y	X	T	E	A	E	K	I
Template Known Secondary structure							T	T	S	S								S													.										S	S													S	S
Template Predicted Secondary structure																															.
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.		.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		782	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P
Query Conservation
Alig confidence																		.	.																						.	.	.	.	.	.	.	.	.
Template Conservation																		.	.																						.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	I	I	E	D	I	K	E	R	T	A	K	G	Q	P	.	.	V	L	V	G	T	I	S	I	E	K	S	E	L	V	S	N	E	L	T	K	A	.	.	.	.	.	.	.	.	.	G	I	K	H	N	V	L	N	A	K	F	H
Template Known Secondary structure														T	T			.	.						S	S															.	.	.	.	.	.	.	.	.	T								T	T
Template Predicted Secondary structure																		.	.																						.	.	.	.	.	.	.	.	.
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.			.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.										.	.	.	.	.	.	.	480	.	.	.	.
		842	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.
Template Sequence		A	N	E	A	A	I	V	A	Q	A	G	Y	P	A	.	.	A	V	T	I	A	T	N	X	A	G	R	G	T	D	I	V	L	G	G	S	W	Q	A	E	V	A	A	L	E	N	P	T	A	E	Q	I	E	K	I	K	A	D	W	Q
Template Known Secondary structure										T	T	T	S	T	T	.	.							S			S	S						T	T			S	S	T	T	T	T	T		S	S
Template Predicted Secondary structure																.	.
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
					873	.	.	.						.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.
Predicted Secondary structure		.	.	.					.	.	.	.	.
Query SS confidence		.	.	.					.	.	.	.	.
Query Sequence		.	.	.	D	G	I	Y	.	.	.	.	.	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	P	G	K	C	Y
Query Conservation		.	.	.					.	.	.	.	.
Alig confidence		.	.	.					.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	H	D	A	V	L	E	A	G	G	L	H	I	I	G	T	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	S	R	R	I	D	N	Q	L	R	G	R	S	G	R	Q	G	D	A	G	S	S
Template Known Secondary structure										T	T	S						S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S										T	T	S	S	G	G	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.																			.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.
		925	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	F	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		585	.	.