Job Description A2A4P0 Confidence 99.76% Date Wed Jul 10 14:06:11 BST 2013 Rank 40 Aligned Residues 298 % Identity 21% Template c2fsgA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli Resolution 2.20 Å

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		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.			620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		R	E	S	L	P	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	.	.	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R
Query Conservation																																				.	.
Alig confidence																																				.	.								.	.													.
Template Conservation																																													.	.													.
Template Sequence		K	R	V	F	G	X	R	H	F	D	V	Q	L	L	G	G	X	V	L	N	E	R	C	I	A	E	X	R	T	G	E	G	K	T	L	T	A	T	L	P	A	Y	L	.	.	N	A	L	T	G	K	G	V	H	V	V	T	.	V	N
Template Known Secondary structure						S														T	T	S	S							T	T	S						T							.	.			T	T	S	S							.	S	S
Template Predicted Secondary structure																																													.	.													.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130		.	.
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.				660	.	.	.	.	.	.	.	.	.	670	.	.	.	.					.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.
Predicted Secondary structure																		.	.	.																.	.	.	.																						.
Query SS confidence																		.	.	.																.	.	.	.																						.
Query Sequence		R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	.	.	.	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	.	.	.	.	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	.
Query Conservation																		.	.	.																.	.	.	.																						.
Alig confidence			.	.	.	.												.	.	.																.	.	.	.																						.
Template Conservation			.	.	.	.
Template Sequence		D	.	.	.	.	Y	L	A	Q	R	D	A	E	N	N	R	P	L	F	E	F	L	G	L	T	V	G	I	N	L	P	G	X	P	A	P	A	K	R	E	A	Y	A	A	D	I	T	Y	G	T	N	N	E	Y	G	F	D	Y	L	R
Template Known Secondary structure			.	.	.	.																	T	T								T	T												S	S
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		133					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
									696	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.																	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R
Query Conservation		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.
Template Sequence		D	N	X	A	F	S	P	E	E	R	V	Q	R	K	L	H	Y	A	L	V	D	E	V	D	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G	P	N	Q	T	L	A	S	I	T	F	Q	N	Y	F	R	.	.	.	.	.	.
Template Known Secondary structure			T	T		S	S	G	G	G												S						T	T	T	T	T	T																						T	.	.	.	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		733	.	.	.	.	.	.	740	.	.	.	.			.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.				.	.	.	.	.	780	.	.	.	.	.	.	.
Predicted Secondary structure														.	.																															.	.	.
Query SS confidence														.	.																															.	.	.
Query Sequence		Q	D	M	K	L	I	V	T	S	A	T	L	.	.	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	.	.	.	E	P	E	T	D	Y	L	D	A	S	L	I	T
Query Conservation														.	.																															.	.	.
Alig confidence														.	.											.																				.	.	.
Template Conservation																										.
Template Sequence		L	Y	E	K	L	A	G	X	T	G	T	A	D	T	E	A	F	E	F	S	S	I	Y	K	.	L	D	T	V	V	V	P	T	N	R	P	X	I	R	K	D	L	P	D	L	V	Y	X	T	E	A	E	K	I	Q	A	I	I	E	D
Template Known Secondary structure		T	S	S								S														.									S	S													S	S
Template Predicted Secondary structure																										.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		788	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R
Query Conservation
Alig confidence												.	.																						.	.	.	.	.	.	.	.	.
Template Conservation												.	.																						.	.	.	.	.	.	.	.	.
Template Sequence		I	K	E	R	T	A	K	G	Q	P	.	.	V	L	V	G	T	I	S	I	E	K	S	E	L	V	S	N	E	L	T	K	A	.	.	.	.	.	.	.	.	.	G	I	K	H	N	V	L	N	A	K	F	H	A	N	E	A	A	I
Template Known Secondary structure								T	T			.	.						S	S														T	.	.	.	.	.	.	.	.	.	T								T	T
Template Predicted Secondary structure												.	.																						.	.	.	.	.	.	.	.	.
Template SS confidence
		442	.	.	.	.	.	.	.	450	.			.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.										.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
		848	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.
Template Sequence		V	A	Q	A	G	Y	P	A	.	.	A	V	T	I	A	T	N	X	A	G	R	G	T	D	I	V	L	G	G	S	W	Q	A	E	V	A	A	L	E	N	P	T	A	E	Q	I	E	K	I	K	A	D	W	Q	V	R	H	D	A	V
Template Known Secondary structure				T	T	T	S	T	T	.	.							S			T	T						T	T			S					T	T		S	S			T
Template Predicted Secondary structure										.	.
Template SS confidence
		491	.	.	.	.	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
							876	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.		920	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																													.
Query SS confidence		.	.	.	.	.																																													.
Query Sequence		.	.	.	.	.	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	.	P	G	K	C	Y	R	L	Y	T
Query Conservation		.	.	.	.	.																																													.
Alig confidence		.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	A	G	G	L	H	I	I	G	T	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	S	R	R	I	D	N	Q	L	R	G	R	S	G	R	Q	G	D	A	G	S	S	R	F	Y	L	S
Template Known Secondary structure				T	T	S						S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S									T	T	S	S	G	G	G
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		549	550	.	.	.	.	.	.	.	.	.	560	.																			.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D