Job Description A2A4P0 Confidence 99.85% Date Wed Jul 10 14:06:11 BST 2013 Rank 32 Aligned Residues 350 % Identity 18% Template c2eyqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Resolution 3.20 Å

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		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	E	R	R	E	L	K	Q	A	Q	R	E	A	E	M	D	S	I	P	M	G	L	N	K	H	W	V	D	P	L	P	D	A	E	G	R	Q	I	A	A	N	M	R	G	I	G	M	M	P	N	D	I	P	E	W	K	K	H	A
Query Conservation
Alig confidence																																																										.	.	.	.
Template Conservation																																																										.	.	.	.
Template Sequence		S	R	A	R	Q	K	A	A	E	K	V	R	D	V	A	A	E	L	L	D	I	Y	A	Q	R	A	A	K	E	G	F	A	F	K	H	D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	T	T	P	D	Q	A	.	.	.	.
Template Known Secondary structure																												T	S																		T			S								.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.			.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		F	G	G	N	K	A	S	Y	G	K	K	T	Q	M	S	I	L	E	Q	R	E	S	L	P	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	.	.	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q
Query Conservation																																										.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.													.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	.	T	E	V	A	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S	S	S												T	T	T	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template SS confidence
																												607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.		.	.	.	.	.
		625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.											.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	.	.	.	.	.	.	.	.	.	.	F	E	D
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.												.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.
Template Sequence		R	A	A	F	L	A	V	D	N	H	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	.	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E
Template Known Secondary structure									T	T	T								S	S															S	T	.	T	T	T							S	T	T	S
Template Predicted Secondary structure																																					.
Template SS confidence
		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.		.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
		675	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D
Query Conservation
Alig confidence																				.	.	.	.																								.	.	.	.	.	.
Template Conservation																				.	.	.	.																								.	.	.	.	.	.
Template Sequence		V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	Q	S	.	.	.	.	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	K	.	.	.	.	.	.	E	R	I	K	A	M	R	A	N
Template Known Secondary structure				T	T			S						T					S	.	.	.	.					S	S								S	G	G	G	S						.	.	.	.	.	.								T	T
Template Predicted Secondary structure																				.	.	.	.																								.	.	.	.	.	.
Template SS confidence
		699	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.					.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.							740	.	.	.	.	.	.	.	.
		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.					.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790
Predicted Secondary structure																													.	.	.	.
Query SS confidence																													.	.	.	.
Query Sequence		M	K	L	I	V	T	S	A	T	L	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	.	.	.	.	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q
Query Conservation																													.	.	.	.
Alig confidence																													.	.	.	.																												.	.
Template Conservation																																																												.	.
Template Sequence		V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L	A	V	K	T	F	V	R	E	Y	D	S	M	V	V	R	E	A	I	L	R	E	I	.	.
Template Known Secondary structure		S							S	S											T	T	T	S											B		B																							.	.
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		749	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.
		791	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D
Query Conservation
Alig confidence		.	.	.	.																											.	.	.	.	.	.	.
Template Conservation		.	.	.	.																											.	.	.	.	.	.	.
Template Sequence		.	.	.	.	L	R	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	.	.	.	.	.	.	.	V	P	E	A	R	I	A	I	G	H	G	Q	M	R	E	R	E	L	E	R	V	M	N
Template Known Secondary structure		.	.	.	.	T	T	T										S	S													.	.	.	.	.	.	.		T	T	S							S	S
Template Predicted Secondary structure		.	.	.	.																											.	.	.	.	.	.	.
Template SS confidence
						807	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.								.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.
		851	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Template Sequence		D	F	H	H	Q	R	F	N	V	L	V	C	T	T	I	I	E	T	G	I	D	I	P	T	A	N	T	I	I	.	.	.	.	.	.	.	.	I	E	R	A	D	H	F	.	.	.	.	.	.	.	.	.	G	L	A	Q	L	H	Q
Template Known Secondary structure					T	T	S							S	S	T	T	G	G	G	S			T	T						.	.	.	.	.	.	.	.		T	T	T	T	S	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Template SS confidence
		856	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.									.	.	.	.	.	890	.										.	.	.	.	.	.	.
		911	.	.	.	.	.	.	.	.		920	.	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		R	A	G	R	A	G	R	T	G	.	P	G	K	C	Y	R	L	Y	T
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		L	R	G	R	V	G	R	S	H	H	Q	A	Y	A	W	L	L	T	P
Template Known Secondary structure				T	T			B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		899	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.