Job Description A2A4P0 Confidence 100.00% Date Wed Jul 10 14:06:11 BST 2013 Rank 9 Aligned Residues 426 % Identity 15% Template c1ymfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:genome polyprotein [contains: flavivirin PDBTitle: crystal structure of yellow fever virus ns3 helicase2 complexed with adp Resolution 2.60 Å Model Dimensions (Å) X:73.496 Y:68.154 Z:55.224

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		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G
Query Conservation
Alig confidence																																																										.	.	.	.
Template Conservation																																																										.	.	.	.
Template Sequence		H	X	L	K	K	G	X	T	T	V	L	D	F	H	P	G	A	G	K	T	R	R	F	L	P	Q	I	L	A	E	C	A	R	R	R	L	R	T	L	V	L	A	P	T	R	V	V	L	S	E	X	K	E	A	F	H	.	.	.	.
Template Known Secondary structure			T	T	S	T	T									T	T	S		T	T	T	T													T								S	S												T	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		660	.	.	.	.	.	.	.	.	.	670	.		.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		C	C	L	G	Q	E	V	G	Y	T	I	R	.	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T
Query Conservation														.
Alig confidence		.	.	.										.
Template Conservation		.	.	.
Template Sequence		.	.	.	G	L	D	V	K	F	H	T	Q	A	F	S	A	H	G	S	G	R	E	V	I	D	A	X	C	H	A	T	L	T	Y	R	X	L	E	P	T	R	V	V	N	W	E	V	I	I	X	D	E	A	H	F	L	D	P	A	S
Template Known Secondary structure		.	.	.	T	S						S	S								S	S																	S	S							S					T	T	T	T			S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T
Query Conservation
Alig confidence													.																.	.	.	.	.	.	.	.	.	.
Template Conservation													.																.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	A	R	G	W	A	A	H	R	A	.	R	A	N	E	S	A	T	I	L	X	T	A	T	P	P	.	.	.	.	.	.	.	.	.	.	G	T	S	D	E	F	P	H	S	N	G	E	I	E	D	V	Q	T	D	I	P	S	E
Template Known Secondary structure													.		T	T	S								S	S		T	.	.	.	.	.	.	.	.	.	.	T				S	S				S	S											S	S
Template Predicted Secondary structure													.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.											.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		779	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S
Query Conservation
Alig confidence							.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Sequence		P	W	N	T	G	.	.	.	.	.	.	H	D	W	I	L	A	D	K	R	P	T	A	W	F	L	P	S	I	R	A	A	N	V	X	A	A	S	L	R	K	A	.	.	.	.	.	.	.	.	.	G	K	S	V	V	V	L	N	R
Template Known Secondary structure				S	S	S	.	.	.	.	.	.		T							S							S															T	.	.	.	.	.	.	.	.	.	T								S
Template Predicted Secondary structure							.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template SS confidence
		348	.	350	.	.							.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.										.	.	.	.	.	.	390	.	.
		839	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.		.	.	.	.	.	.	.	890	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	.	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q
Query Conservation																																														.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																				.										.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		K	T	F	.	.	.	.	.	.	.	.	.	.	.	.	E	K	K	P	D	F	I	L	A	T	D	I	A	E	X	G	A	N	L	.	C	V	E	R	V	L	D	C	R	T	A	F	K	P	V	L	V	D	E	G	R	K	V	A	I
Template Known Secondary structure		S	S		.	.	.	.	.	.	.	.	.	.	.	.					S					S	S	G	G	G			T	T		.			S															T	T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
		393	.	.													.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
		898	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.		920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	.	P	G	K	C	Y	R	L	Y	T	E	R	A	Y	R	D	E	M	L	T	T	N	V	P	E	I	Q	R	T	N	L	A	S	T	V	L	S	L
Query Conservation																								.
Alig confidence																								.																.
Template Conservation																																								.
Template Sequence		K	G	P	L	R	I	S	A	S	S	A	A	Q	R	R	G	R	I	G	R	N	P	N	R	D	G	D	S	Y	Y	Y	S	E	P	T	S	E	N	.	N	A	H	H	V	C	W	L	E	A	S	X	L	L	D	N	X	E	V	R	G
Template Known Secondary structure																	T	T	S	S			T	T										S						.		T	T	B											T	T	S			G	G
Template Predicted Secondary structure																																								.
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.		.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
		957	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	M	G	I	N	D	L	L	S	F	D	F	M	D	A	P	P	M	E	T	L	I	T	A	M	E	Q	L	Y	T	L	G	A	L	D	D	E	G	L	L	T	R	L	G	R	R	M	A	E	F	P	L	E	P	M	L	C	K	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	X	V	A	P	L	Y	G	V	E	G	T	K	T	P	V	S	P	G	E	X	R	L	R	D	D	Q	R	K	V	F	R	E	L	V	R	N	C	D	L	P	V	W	L	S	W	Q	V	A	K	A	G	L	K	T	N	D	R	K	W
Template Known Secondary structure		G						S	T	T						S	S		T	T	T	T																T	T												T	T	T			T	T			G	G
Template Predicted Secondary structure
Template SS confidence
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
		1017	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	M	S	V	H	L	G	C	S	E	E	M	L	T	I	V	S	M	L	S	V	Q	N	V	F	Y	R	P	K	D	K	Q	A	L	A	D	Q	K	K	A	K	F	H	Q	T	E	G	D	H	L	T	L	L	A	V	Y	N	S	W
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	C	F	E	G	P	E	E	H	E	I	L	N	D	S	G	E	T	V	K	C	R	A	P	G	G	A	K	K	P	L	R	P	R	W	C	D	E	R	V	S	S	D	Q	S	A	L	S	E	F	I	K	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	G	T	S			G	G	G			B		T	T	S		B						T	T	S								S	S			G	G	G	G	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
		1077	.	.	1080
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	G	R
Template Known Secondary structure			T	T	T
Template Predicted Secondary structure
Template SS confidence
		619	620	.	.