Job Description A2A4P0 Confidence 99.55% Date Wed Jul 10 14:06:11 BST 2013 Rank 57 Aligned Residues 290 % Identity 27% Template c1tf2A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis Resolution 2.90 Å

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		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.			.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	.	.	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V
Query Conservation																											.	.
Alig confidence																											.	.								.	.	.														.	.	.	.
Template Conservation																																				.	.	.														.	.	.	.
Template Sequence		Q	L	M	G	G	V	A	L	H	D	G	N	I	A	E	M	K	T	G	E	G	K	T	L	T	S	T	L	P	V	Y	L	N	A	.	.	.	L	T	G	K	G	V	H	V	V	T	V	N	E	.	.	.	.	Y	L	A	S	R	D
Template Known Secondary structure											T	T	S						T	T	S															.	.	.	T	T	S	S							S	S		.	.	.	.
Template Predicted Secondary structure																																				.	.	.														.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.
		655	.	.	.	.				660	.	.	.	.	.	.	.	.	.	670	.	.	.	.					.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690					.	.	.	.	.					.	.	.	.
Predicted Secondary structure							.	.	.																.	.	.	.																	.	.	.	.						.	.	.	.
Query SS confidence							.	.	.																.	.	.	.																	.	.	.	.						.	.	.	.
Query Sequence		S	E	E	F	G	.	.	.	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	.	.	.	.	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	.	.	.	.	L	R	E	C	L	.	.	.	.	I	D	P	D
Query Conservation							.	.	.																.	.	.	.																	.	.	.	.						.	.	.	.
Alig confidence							.	.	.																.	.	.	.																	.	.	.	.						.	.	.	.
Template Conservation
Template Sequence		A	E	Q	M	G	K	I	F	E	F	L	G	L	T	V	G	L	N	L	N	S	M	S	K	D	E	K	R	E	A	Y	A	A	D	I	T	Y	S	T	N	N	E	L	G	F	D	Y	L	R	D	N	M	V	L	Y	K	E	Q	M	V
Template Known Secondary structure												T	T								T	T										T	T	S	S																	T	T		S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.																	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query Sequence		L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	.	.	.	.	.	.	.	.
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Alig confidence														.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation														.
Template Sequence		Q	R	P	L	H	F	A	V	I	D	E	V	.	D	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G	Q	A	A	K	S	T	K	L	Y	V	Q	A	N	A	F	V	R	T	L	K	A	E	K	D	Y	T	Y	D	I	K	T
Template Known Secondary structure												T		.					T	T	S	T	T								S	S															T	T			S	S	S	S					S	S	S
Template Predicted Secondary structure														.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	V	Q	L	T	E	E	G	M	T	K	A	E	K	A	F	G	I	D	N	L	F	D	V	K	H	V	A	L	N	H	H	I	N	Q	A	L	K	A	H	V	A	M	Q	K	D	V	D	Y	V	V	E	D	G	Q	V	V	I	V
Template Known Secondary structure																		T	T		S		S	S	S	G	G	G																T			B	T	T	T					T	T					B
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
																																																			736	.	.	.	740	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	I	V	T	S	A	T	L	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation
Template Sequence		D	S	F	T	G	R	L	M	K	G	R	R	Y	S	E	G	L	H	Q	A	I	E	A	K	E	G	L	E	I	Q	N	E	S	M	T	L	A	T	I	T	F	Q	N	Y	F	R	M	Y	E	K	L	A	G	M	T	G	T	A	K	T
Template Known Secondary structure			T	T	T			B		T	T				T	T	T									T	T																				T	T	S	S							S			G	G
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		745	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.					.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	.	.	.	.	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I
Query Conservation																																	.	.	.	.
Alig confidence												.									.												.	.	.	.																							.	.
Template Conservation												.									.																																						.	.
Template Sequence		E	E	E	E	F	R	N	I	Y	N	.	M	Q	V	V	T	I	P	T	.	N	R	P	V	V	R	D	D	R	P	D	L	I	Y	R	T	M	E	G	K	F	K	A	V	A	E	D	V	A	Q	R	Y	M	T	G	Q	P	.	.	V
Template Known Secondary structure		G										.									.	S	S													S	S																			T			.	.
Template Predicted Secondary structure												.									.																																						.	.
Template SS confidence
		377	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.			.
		801	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.																											.	.
Template Conservation																						.	.	.	.	.	.	.	.	.																											.	.
Template Sequence		L	V	G	T	V	A	V	E	T	S	E	L	I	S	K	L	L	K	N	K	.	.	.	.	.	.	.	.	.	G	I	P	H	Q	V	L	N	A	K	N	H	E	R	E	A	Q	I	I	E	E	A	G	Q	K	G	.	.	A	V	T
Template Known Secondary structure						S	S													T	T	.	.	.	.	.	.	.	.	.	T								S	S	S										T	S	S	S	T	T	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																											.	.
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.										.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.			.	480	.
		861	.	.	.	.	.	.	.	.	870	.	.				.	.	.	.						.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.
Predicted Secondary structure														.	.	.					.	.	.	.	.
Query SS confidence														.	.	.					.	.	.	.	.
Query Sequence		I	A	T	N	I	A	E	T	S	L	T	I	.	.	.	D	G	I	Y	.	.	.	.	.	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A
Query Conservation														.	.	.					.	.	.	.	.
Alig confidence														.	.	.					.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	T	N	M	A	G	R	G	T	D	I	K	L	G	E	G	V	K	E	L	G	G	L	A	V	V	G	T	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	S	R	R	I	D	N	Q	L	R
Template Known Secondary structure					T	T	S	S	T	T							T	T		G	G	G	T	S						S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.																			.	.	.	.	.	.	.	520	.	.	.
		913	.	.	.	.	.	.	920	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	A	G	R	T	G	P	G	K	C	Y	R	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	S	G	R	Q	G	D	P	G	I	T	Q	F	Y
Template Known Secondary structure		T	T	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.