Job Description A2A4P0 Confidence 99.75% Date Wed Jul 10 14:06:11 BST 2013 Rank 41 Aligned Residues 337 % Identity 14% Template c1s2mA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:putative atp-dependent rna helicase dhh1; PDBTitle: crystal structure of the dead box protein dhh1p Resolution 2.10 Å

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		569	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620			.	.	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		G	N	K	A	S	Y	G	K	K	T	Q	M	S	I	L	E	Q	R	E	S	L	P	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	.	.	Q	I	T	Q	Y	L
Query Conservation																																																						.	.
Alig confidence																																																						.	.
Template Conservation
Template Sequence		T	F	E	D	F	Y	L	K	R	E	L	L	M	G	I	F	E	A	G	F	E	K	P	S	P	I	Q	E	E	A	I	P	V	A	I	T	G	R	D	I	L	A	R	A	K	N	G	T	G	K	T	A	A	F	V	I	P	T	L	E
Template Known Secondary structure			G	G	G	G													T	T			S															T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.							.	.	.	.	.	680
Predicted Secondary structure																																																		.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.
Query Sequence		A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	.	.	.	.	.	.	C	T	S	P	E	T
Query Conservation																																																		.	.	.	.	.	.
Alig confidence																														.																				.	.	.	.	.	.
Template Conservation																														.
Template Sequence		K	V	K	P	K	L	N	K	I	Q	A	L	I	M	V	P	T	R	E	L	A	L	Q	T	S	Q	V	V	.	R	T	L	G	K	H	C	G	I	S	C	M	V	T	T	G	G	T	N	L	R	D	D	I	L	R	L	N	E	T	V
Template Known Secondary structure					T	T	S		S								S	S												.				T	T	T	T	T								S	S	S									T	T	S
Template Predicted Secondary structure																														.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		681	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.		700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	.	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		H	I	L	V	G	T	P	G	R	V	L	D	L	A	S	R	K	V	A	D	L	S	D	C	S	L	F	I	M	D	E	A	D	K	M	L	S	R	D	F	K	T	I	I	E	Q	I	L	S	F	L	P	P	T	H	Q	S	L	L	F
Template Known Secondary structure		S															T	T		S			T	T								S					S	S												T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	A	T	L	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	T	F	P	L	T	V	K	E	F	M	V	K	H	L	H	K	P	Y	E	I	N	L	M	E	E	L	T	L	K	G	I	T	Q	Y	Y	A	F	V	E	E	R	Q	K	L	H	C	L	N	T	L	F	S	K	L	Q	I	N	Q
Template Known Secondary structure			S															S	S					S			S	S		B		T	T										G	G	G												S			S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.
Template Sequence		A	I	I	F	C	N	S	T	N	R	V	E	L	L	A	K	K	I	T	D	L	.	.	.	.	.	.	.	.	.	G	Y	S	C	Y	Y	S	H	A	R	M	K	Q	Q	E	R	N	K	V	F	H	E	F	R	Q	G	K	V	R	T
Template Known Secondary structure							S	S															.	.	.	.	.	.	.	.	.	T								T	T	S														T	T	S	S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.										.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	.
Query Conservation																																																													.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	C	S	D	L	L	T	R	G	I	D	I	Q	A	V	N	V	V	I	N	F	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	T	A	E	T	Y	L	H	R	I	G	R	S	G	R	F	G
Template Known Secondary structure					S	S		S	S	S	S				T	T							S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S										B	S	S		T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360																			.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		919	920	.	.	.	.	.	.	.	.	.	930	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	G	K	C	Y	R	L	Y	T	E	R	A	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	L	G	L	A	I	N	L	I	N	W	N	D	R	F
Template Known Secondary structure												G	G	G
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D