Job Description A2A4P0 Confidence 98.00% Date Wed Jul 10 14:06:11 BST 2013 Rank 158 Aligned Residues 140 % Identity 18% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		606	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.		.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	.	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G
Template Known Secondary structure									S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T	T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		665	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.		720	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	.	V	L	F	G
Query Conservation																																																									.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	P	N	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E
Template Known Secondary structure			S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T													T	T		S									S			S	S	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.																	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		724	.	.	.	.	.		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.				.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.
Predicted Secondary structure								.																.	.	.
Query SS confidence								.																.	.	.
Query Sequence		L	L	K	K	T	V	.	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	.	.	.	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I
Query Conservation								.																.	.	.
Alig confidence								.																.	.	.
Template Conservation
Template Sequence		E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	R	F	H	Q	A	S	P	I	G	S	V
Template Known Secondary structure													S								T	T	T	G	G	G	G									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D