Job Description A2A4P0 Confidence 96.10% Date Wed Jul 10 14:06:11 BST 2013 Rank 243 Aligned Residues 107 % Identity 12% Template c1ojlD_ PDB info PDB header:response regulator Chain: D: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

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		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V
Query Conservation
Alig confidence																														.																													.	.	.
Template Conservation																														.																													.	.	.
Template Sequence		M	Q	H	L	L	N	E	I	A	M	V	A	P	S	D	A	T	V	L	I	H	G	D	S	G	T	G	K	.	E	L	V	A	R	A	L	H	A	C	S	A	R	S	D	R	P	L	V	T	L	N	C	A	A	L	N	E	.	.	.
Template Known Secondary structure														S	T	T							S		T	T	S			.											S	S		S	S	S								T	T				.	.	.
Template Predicted Secondary structure																														.																													.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		651	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E
Query Conservation
Alig confidence		.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	D	K	R	R	E	G	R	F	V	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	G	T	L	F	L	D	E
Template Known Secondary structure		.								S		B		T	T	S		S	S					B			S	T	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S						S
Template Predicted Secondary structure		.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.																						.	.	.	.	.	.	.	240	.
		711	.	.	.	.	.	.	.	.	720	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	E	R	T	I	H	T	D	V	L	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	D	I	S	P	L	M	Q	V	R	L	L
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D