Job Description A2A4P0 Confidence 96.49% Date Wed Jul 10 14:06:11 BST 2013 Rank 216 Aligned Residues 124 % Identity 21% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.						.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.
Query SS confidence																			.	.	.	.	.
Query Sequence		I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	.	.	.	.	.	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V
Query Conservation																			.	.	.	.	.
Alig confidence																			.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	S	S		S									S	T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I
Query Conservation
Alig confidence		.	.	.															.	.	.	.	.															.	.	.
Template Conservation		.	.	.															.	.	.	.	.															.	.	.
Template Sequence		.	.	.	A	L	A	A	K	I	A	E	E	S	N	F	P	F	.	.	.	.	.	I	K	I	C	S	P	D	K	M	I	G	F	S	E	.	.	.	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y	K	S	Q	L	S	C
Template Known Secondary structure		.	.	.													S		.	.	.	.	.						G	G	G	S	T	T				.	.	.																T	S	S
Template Predicted Secondary structure		.	.	.															.	.	.	.	.															.	.	.
Template SS confidence
					551	.	.	.	.	.	.	.	.	560	.	.	.	.						.	.	.	.	.	570	.	.	.	.	.	.	.	.				.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
		706	.	.	.	710	.	.								.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.			.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
Predicted Secondary structure									.	.	.	.	.	.	.																								.	.
Query SS confidence									.	.	.	.	.	.	.																								.	.
Query Sequence		I	M	L	D	E	A	H	.	.	.	.	.	.	.	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	.	.	K	L	I	V	T	S	A	T	L	D	A	V	K	F	S	Q
Query Conservation									.	.	.	.	.	.	.																								.	.
Alig confidence									.	.	.	.	.	.	.																								.	.
Template Conservation
Template Sequence		V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	P	P	Q	G	R	K	L	L	I	I	G	T	T	S	R	K	D	V	L	Q	E
Template Known Secondary structure											T	T		B	T	T	T	T	B													T	T				S	T	T										S
Template Predicted Secondary structure
Template SS confidence
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D